Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0557 ATGTTTACTGTGTACGCCATGATTTTCATGATTTCATTACCATCTTTAATTGCAGTGCCACACTCCTCAGAACACCTGTCAGCTGAGGTGCAAATTCTTGCCAGTTGTTTTTATTTATTTATTTACAAATATCATGTAAGAATTCCGTGCAAGTTACTCTTTCTTTCCTGGCATGGGAAAAGCAAAGGGCATATCAAAATGAAGGCATTGATTCTTGTCGGAGGGTTTGGAACAAGGTTGAGGCCATTGACACTTAGTGTTCCTAAGCCTCTTGTTGATTTTGCTAACAAGCCCATGATTTTGCATCAGATAGAGGCTCTTAAGGCCATCGGAGTCAATGAAGTGGTACTAGCTATCAACTACCAACCAGAGGTGATGTTGAATTTCTTGAAGGACTTTGAAGCAAAACTTGGCATCAAAATCACATGTTCTCAAGAAACTGAACCGCTGGGGACGGCAGGTCCCTTGGCTCTTGCAAGGGATAAGCTGATAGATGACTCTGGAAAGCCATTTTTTGTTCTCAACAGTGATGTTATTAGTGAGTACCCACTTAAAGAAATGATTGAATTCCACAAATCCCATGGAGGAGAAGCTTCCATAATGGTGACAAAGGTTGATGAGCCATCAAAATATGGTGTGGTTGTGATGGAGGAAACCACTGGTCAGGTTGACAAATTTGTGGAGAAACCAAAGCTGTTTGTTGGTAACAAAATCAATGCTGGAATCTATCTATTGAACCCCTCAGTTTTGGATCGAATTGAACTGAGGCCCACTTCTATTGAGAAAGAGGTGTTTCCAAAGATTGCAGCAGAGAAAAAGCTATATGCAATGGTGCTTCTGGGATTTTGGATGGACATTGGTCAACCAAGGGACTACGTTTCTGGCCTGAGACTCTACTTGGACTCACTGAGGAAAAATAATTCTTCTAAGCTGGCCAGTGGCCCTCACATTCTGGGGAATGTCATTGTGGACGAGACCGCCAAAATCGGCGACGGGTGTCTCATTGGACCTGATGTTGCAATCGGTCCTGGCTGCATTGTTGAATCCGGTGTCAGGCTCTCATGCTGCACTGTAATGCGTGGAGTACGCATTAAGAAACACGCTTGCATCTCCAGCAGTATCATCGGGTGGCATTCCACTGTCGGGCAATGGGCTCGTGTGGAGAATATGACCATCCTTGGAGAAGATGTTCATGTAGGTGATGAAATTTACAGCAATGGTGGTGTGGTTTTGCCCCACAAGGAGATCAAGTCAAGCATTCCGAACCCAGAGATAGTTATGTGA 1284 0.4385 MFTVYAMIFMISLPSLIAVPHSSEHLSAEVQILASCFYLFIYKYHVRIPCKLLFLSWHGKSKGHIKMKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAIGVNEVVLAINYQPEVMLNFLKDFEAKLGIKITCSQETEPLGTAGPLALARDKLIDDSGKPFFVLNSDVISEYPLKEMIEFHKSHGGEASIMVTKVDEPSKYGVVVMEETTGQVDKFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEVFPKIAAEKKLYAMVLLGFWMDIGQPRDYVSGLRLYLDSLRKNNSSKLASGPHILGNVIVDETAKIGDGCLIGPDVAIGPGCIVESGVRLSCCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVGDEIYSNGGVVLPHKEIKSSIPNPEIVM 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0557 427 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 66 295 IPR029044 -
Lal3g0557 427 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 47 427 - -
Lal3g0557 427 Pfam Nucleotidyl transferase 68 295 IPR005835 GO:0009058|GO:0016779
Lal3g0557 427 CDD M1P_guanylylT_B_like_N 67 300 IPR045233 GO:0004475|GO:0005525|GO:0009298
Lal3g0557 427 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE FAMILY PROTEIN-RELATED 47 427 - -
Lal3g0557 427 SUPERFAMILY Nucleotide-diphospho-sugar transferases 66 378 IPR029044 -
Lal3g0557 427 Gene3D Hexapeptide repeat proteins 296 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0557 Lal-Chr3 4207679 4210425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0557 66 251 Eukaryotic Initiation Factors Gene Family AT4G18300 22.680 5.65e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0557 K00966 - sind:105160944 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0557 3 4207679 4210425 Lal3g0557 3 4207679 4210425 ECH
Lal3g0557 3 4207679 4210425 Lal5g1158 5 14309917 14316096 LSH
Lal3g0557 3 4207679 4210425 Lal18g1343 18 15867091 15869659 LSH
Lal3g0557 3 4207679 4210425 Lal18g1343 18 15867091 15869659 PCT
Lal3g0557 3 4207679 4210425 Lal22g0257 22 1633173 1636516 PCT
Lal3g0557 3 4207679 4210425 Lal6g0268 6 1741787 1745133 PCT
Lal18g1343 18 15867091 15869659 Lal3g0557 3 4207679 4210425 PCT
Lal22g0257 22 1633173 1636516 Lal3g0557 3 4207679 4210425 PCT
Lal6g0268 6 1741787 1745133 Lal3g0557 3 4207679 4210425 PCT