Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0555 ATGAGCGATTTCAAGCCATTCTCCGAATCATCGCAAACCGGTGGCTCTTCCTCCTCACGCTCCATCAGTGAAACCATCAATGGCTCTCACGAATTCACCATAAATGGATACTCTTTGGCCAAAGGGATGGGTGCCGGAAAGTACATCATGAGTGACACCTTCAGTGTCGGCGGTTACGATTGGGCAATTTACTTTTACCCTGATGGGAAGAACCCTGAGGATAATTCCATGTATGTTTCAGTGTTCATCGCTCTCGCGAGCGAAGGAACGGATGTTAGGGCGCTGTTTAAGTTGATACTTGTTGATCAGACTCCTAAAGGGAATAATAAAGTGCATAGCCACTTTGATCGGCCACTTGAGAGTGGACCTTATACTTTGAAGTATAGGGGTAGCATGTGGGGTTACAAGCGTTTTTTCAGAAGGTCACTTTTGGAGACTTCAGACTATCTGAAGAATGACTGCCTTATCATGGATTGCACCGTTGGTGTTGTCAAGACTCGGTTTGAGGGGTCAAAACAGGGTATTGTTGTGCCACAGTCGAACATGGGCCGAGATTTTAAGGACTTATTCGAATCTGAAGTTGGCTGTGACATAGTTTTCAAGGTCAAGAATGAAAGCTTCAAAGCTCATAAATTGATACTTGCTGCCCGATCTCCTGTGTTTAGAGCTCAGTTTTTTGGACTTGTTGGGGATCCTAGCATAGATGAAGTGGTGGTAGAGGATATCGAGCCCTTTATCTTCAAGGCAATGCTTCTTTTCATTTACTCAGACAAGCTTCCTGACATATATGAGGTTATGGGCTCAGCACAGATTTGCCCATATACTGTCATGGTGCAACATCTCTTGGCTGCTGCTGATCTTTATAACCTTGATCGACTAAAAACGTTATGTGAATCAAAATTGTGTGATGAAATCAATGTTGACACCGTGGCCACAACACTTGCCTTGGCTGAGCAACACCACTGTCCACAGCTTAAGGCAATGTGCTTAAAATATATTGCAAATCCAACAAACTTGGGAGCTGTAATGCAGTCTGAAGCTTTTATGCATTTGAAAGAGAGCTGCCCATCAATGTTGTTGGAATTGCTGGAGACGTTCACATTAGCGGATGATGACATAAGCCAGCCGTTGAGCAGGAAGAGAAGTAGCAGTAGCATATACGGGCAAGATTTAGCAGACGGTTCAGTTGCTGAATCGGCTAATCCAAATGGCAGGCGTTTTAGGAGGCGGACATGA 1236 0.445 MSDFKPFSESSQTGGSSSSRSISETINGSHEFTINGYSLAKGMGAGKYIMSDTFSVGGYDWAIYFYPDGKNPEDNSMYVSVFIALASEGTDVRALFKLILVDQTPKGNNKVHSHFDRPLESGPYTLKYRGSMWGYKRFFRRSLLETSDYLKNDCLIMDCTVGVVKTRFEGSKQGIVVPQSNMGRDFKDLFESEVGCDIVFKVKNESFKAHKLILAARSPVFRAQFFGLVGDPSIDEVVVEDIEPFIFKAMLLFIYSDKLPDIYEVMGSAQICPYTVMVQHLLAAADLYNLDRLKTLCESKLCDEINVDTVATTLALAEQHHCPQLKAMCLKYIANPTNLGAVMQSEAFMHLKESCPSMLLELLETFTLADDDISQPLSRKRSSSSIYGQDLADGSVAESANPNGRRFRRRT 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0555 411 CDD MATH 28 161 IPR002083 GO:0005515
Lal3g0555 411 CDD BTB_POZ_BPM_plant 182 302 - -
Lal3g0555 411 SMART BTB_4 196 305 IPR000210 GO:0005515
Lal3g0555 411 SUPERFAMILY TRAF domain-like 24 163 - -
Lal3g0555 411 ProSiteProfiles BTB domain profile. 196 259 IPR000210 GO:0005515
Lal3g0555 411 Pfam BTB/POZ domain 186 303 IPR000210 GO:0005515
Lal3g0555 411 MobiDBLite consensus disorder prediction 1 23 - -
Lal3g0555 411 Gene3D Potassium Channel Kv1.1; Chain A 172 299 IPR011333 -
Lal3g0555 411 SMART math_3 32 144 IPR002083 GO:0005515
Lal3g0555 411 ProSiteProfiles MATH/TRAF domain profile. 27 161 IPR002083 GO:0005515
Lal3g0555 411 SUPERFAMILY POZ domain 178 303 IPR011333 -
Lal3g0555 411 Gene3D - 304 385 - -
Lal3g0555 411 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 26 166 IPR008974 GO:0005515
Lal3g0555 411 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 15 376 IPR045005 GO:0016567
Lal3g0555 411 CDD BACK_AtBPM-like 302 358 IPR034090 -
Lal3g0555 411 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 3 15 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0555 Lal-Chr3 4187050 4192699 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lal3g0555 BTB 2e-27 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0555 K10523 - gmx:100786636 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0555 3 4187050 4192699 Lal3g0555 3 4187050 4192699 ECH
Lal3g0555 3 4187050 4192699 Lal5g1162 5 14336290 14342184 LSH