Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0547 ATGTGGATGAAGAGAAAAGAAATATTGAAGTCACATCTTCAAGGAGCATGTAACAACTCATGGGAAGAAAGAGCTTTTGCTGAAGATGCAGAAAGAATAATTGGTGGGTGCATATGGCCTCCAAGATCTTATTCATGCAATTTCTGTAAAAGAGATTTCAGGTCAGCTCAAGCTCTAGGGGGTCACATGAATGTTCACAGAAGGGACAGAGCTAGGCTCAAACAAAATCTTAGCCCTCATCATAATAATGAAGCAAAAACCCTTCAATCTCATCATCATCATGATCACAAAAATTATTGTAAGTCATTAGGTAATTCTCAATTTTCTTATCCTTCATCAATTTCAGAACCAAAAGTGCAAGACAATGCTAGAAAGGGAATTTTTAAAGGTCTTGGTTGTAATGATTATGTTGAGACAAGTTTGTGTGTGGGAGTGAATAATTCAATGTTTGGACAAAAATCATCACCAACTGGTTCATGTGATGAAGAAGGCATCAGTTATAAAAGACCAAAGACTTGTATTATTTCTTCTATGCCTATTTTTCTCAAGCCATGTTCAGAATTTGTACTTGGAATTGAACCTAGAATGGAAGATTTAGATCTTGAACTCAGACTTGGGGGAACACACAGAAAGTGA 636 0.3632 MWMKRKEILKSHLQGACNNSWEERAFAEDAERIIGGCIWPPRSYSCNFCKRDFRSAQALGGHMNVHRRDRARLKQNLSPHHNNEAKTLQSHHHHDHKNYCKSLGNSQFSYPSSISEPKVQDNARKGIFKGLGCNDYVETSLCVGVNNSMFGQKSSPTGSCDEEGISYKRPKTCIISSMPIFLKPCSEFVLGIEPRMEDLDLELRLGGTHRK 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0547 211 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 102 210 - -
Lal3g0547 211 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 102 - -
Lal3g0547 211 Pfam C2H2-type zinc finger 44 68 - -
Lal3g0547 211 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Lal3g0547 211 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Lal3g0547 211 PANTHER OS07G0101800 PROTEIN 102 210 - -
Lal3g0547 211 PANTHER OS07G0101800 PROTEIN 2 102 - -
Lal3g0547 211 SUPERFAMILY beta-beta-alpha zinc fingers 41 71 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0547 Lal-Chr3 4083983 4084618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0547 22 207 C2H2 Transcription Factor Family AT5G06070 39.394 9.00e-29 105
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0547 3 4083983 4084618 Lal18g1339 18 15840555 15841379 PCT
Lal3g0547 3 4083983 4084618 Lal6g0271 6 1772801 1774065 PCT