Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0543 ATGTCTTCTGTGACATCCTCGTATTGGTGTTACAGGTGTAGTCGTTTTGTGAGGGTATGGACGCAGGACACGGTGGTTTGTTCCGATTGCAACGGCGGTTTCATCGAGGAGATCGAAAATCCGGAGCGTGATACTCACGCGGATGACCGGCGGCGACGGGTCCCGGCAGCAGCTATGTACATGATTGGCCAGCCCCCAAATTCTGATCAGAATTCTCAGCCCCCTATTCGTCGAACCAGCCGCGGCGGTGGTGACCGGTCACCATTTAATCCGGTCATTGTTCTGCGCGGCGGTAGATCGACAGAGGGGGCTGCGGGGCAGGACGGCGCGGAGGGTCGTGGGTTTGAGCTTTTCTATGATGATGGTGCAGGTTCTGGTCTTAGGCCTTTGCCTCCTAGCATGTCTGAGTTTCTATTTGGATCTGGATTTGATAGGCTATTGGAACAGCTTTCTCAAATTGAAACCAATGGTATTGGTAGGTATGAACACCCTCCTGCTTCAAAAGCTGCAATTGATTCATTGCCAACAATTGAGATTGGTGAGGATCATTTAGATTTGGAATCACATTGTGCTGTTTGTATGGAACCTTTTGAATTGTGCACTTCAGTTAAGGAAATGCCTTGTAAGCATATATACCATGAAGAATGCATTCTTCCATGGCTTTCACTTCACAATTCGTGCCCCGTTTGTCGCCACGAATTGTCTGTTGATACCCCCAGTCATAGTACACATTTGACAAGGAATTCGACAAATTCGCGTGCTTTGAATGAAGATGAAAACGCGGGGTTGACTATTTGGAGGTTACCAGGTGGAGGGTTTGCCGTCGGGAGGTTTTCTGGTGGGAGAAGAGGCAGCGACAGAGAGCCTCCGGTTGTTTATACCGAAATGGATGGTGGTTTTAACAATGGTGGTGAACCTAGGATGATTTCTTGGTCATCTAGAGGGAGTAGAGGAGGAAGAGAGGGTGGTGGTTTGCTCAGATTTTTCCATAACTTGTTTGGTTGCTTTAGAAATGGTGGAGTTCGAATGCAGCAGCGGTCTACTCCCAGTACCGCATCTCCATCCATCGTGAGGGAAAGTTCGTCGCGCTCCAATATGGTTCCCTCTCCACGTTCCCGCAGAACTTGGTCTATGGATGTGAACAGTGGAATGAGATCATGGTAA 1164 0.4888 MSSVTSSYWCYRCSRFVRVWTQDTVVCSDCNGGFIEEIENPERDTHADDRRRRVPAAAMYMIGQPPNSDQNSQPPIRRTSRGGGDRSPFNPVIVLRGGRSTEGAAGQDGAEGRGFELFYDDGAGSGLRPLPPSMSEFLFGSGFDRLLEQLSQIETNGIGRYEHPPASKAAIDSLPTIEIGEDHLDLESHCAVCMEPFELCTSVKEMPCKHIYHEECILPWLSLHNSCPVCRHELSVDTPSHSTHLTRNSTNSRALNEDENAGLTIWRLPGGGFAVGRFSGGRRGSDREPPVVYTEMDGGFNNGGEPRMISWSSRGSRGGREGGGLLRFFHNLFGCFRNGGVRMQQRSTPSTASPSIVRESSSRSNMVPSPRSRRTWSMDVNSGMRSW 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0543 387 SUPERFAMILY RING/U-box 170 240 - -
Lal3g0543 387 ProSiteProfiles Zinc finger RING-type profile. 190 231 IPR001841 -
Lal3g0543 387 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 333 - -
Lal3g0543 387 CDD RING-H2_RNF181 190 234 - -
Lal3g0543 387 Pfam zinc-ribbon 7 38 IPR039525 GO:0061630
Lal3g0543 387 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 2 333 - -
Lal3g0543 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 236 IPR013083 -
Lal3g0543 387 MobiDBLite consensus disorder prediction 64 78 - -
Lal3g0543 387 Pfam Protein of unknown function (DUF1117) 262 366 IPR010543 -
Lal3g0543 387 MobiDBLite consensus disorder prediction 61 111 - -
Lal3g0543 387 MobiDBLite consensus disorder prediction 342 387 - -
Lal3g0543 387 SMART ring_2 190 230 IPR001841 -
Lal3g0543 387 Pfam Ring finger domain 189 231 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0543 Lal-Chr3 4044815 4045978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0543 129 241 C3H Transcription Factor Family AT5G01980 40.708 3.10e-23 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0543 - K11982 gmx:100807324 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0543 3 4044815 4045978 Lal11g0621 11 5204776 5206629 ECH
Lal9g1598 9 18344011 18346264 Lal3g0543 3 4044815 4045978 ECH
Lal3g0543 3 4044815 4045978 Lal3g0543 3 4044815 4045978 ECH
Lal3g0543 3 4044815 4045978 Lal5g1173 5 14446319 14447485 LSH