Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0542 ATGAGTTTTGTTTTTGGAGGAACAAGAGCAGATATAGAAAATGGATTTCCAGGATTTATACCTCAGAGGCGTACATTGCGTGTTCAAGCTGCACGTCCGAGTAATTCCAATTCTCTCACTTTTCTTGTAACAGTTCTCCTGTTATTCATGATACTGAACTCTCAACAAATGTCACCAAATTTCATGCTCTGGCTGGTGCTTGGTGTTTTCTTGATGGCCACAATGTTAAGGATGTACGCCACATTTCAACAGCTTCAAGCGCAGGCCCAAGCTCATGCAGCAACAGCCAGTGGCCTTCTTGGACACACAGAACTGCGGTTGCATATGCCACCATCAATAGCACTCACAAGCCGAGGGCGGCTGCAAGGCCTCAGACTTCAGCTTGCACTTCTTGATCGAGAGTTCGACGATCTAGACTATGAAACTTTAAGAGCTCTGGATTCAGATAATGTTTCTTCTGGATCTTCAATGACTGAGGAAGAGATCAATGCTCTTCCTGTCCACAAATACAAGGGTTCTGGTCCCCAAAGCAGTAGTTCCTCAATGCAACAAGCTTCATCTTCCACATCTGCCGAGAAGAAGCAAGATCGTTCAAACGCAACTGGGAGCATGAAAGTCTCTGATGATGAGCTCACTTGCAGCGTATGTTTGGAGCAAGTTAATGTTGGAGATATACTCCGTAGCTTGCCCTGCTTGCATCAGTTTCACGCTAATTGCATCGATCCCTGGCTGCGGCAACAAGGGACATGCCCTGTCTGTAAATTCCGAGCAGGATCTGGATGGAATGAAAGCGGGAATGATGATATTGCGGACATGGTTTGA 822 0.4599 MSFVFGGTRADIENGFPGFIPQRRTLRVQAARPSNSNSLTFLVTVLLLFMILNSQQMSPNFMLWLVLGVFLMATMLRMYATFQQLQAQAQAHAATASGLLGHTELRLHMPPSIALTSRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSSGSSMTEEEINALPVHKYKGSGPQSSSSSMQQASSSTSAEKKQDRSNATGSMKVSDDELTCSVCLEQVNVGDILRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSGWNESGNDDIADMV 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0542 273 CDD RING-H2_PA-TM-RING 212 254 - -
Lal3g0542 273 SMART ring_2 213 253 IPR001841 -
Lal3g0542 273 MobiDBLite consensus disorder prediction 172 204 - -
Lal3g0542 273 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SDIR1 1 268 - -
Lal3g0542 273 SUPERFAMILY RING/U-box 207 257 - -
Lal3g0542 273 PANTHER TARGET OF ERK KINASE MPK-1 1 268 - -
Lal3g0542 273 MobiDBLite consensus disorder prediction 168 204 - -
Lal3g0542 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 258 IPR013083 -
Lal3g0542 273 ProSiteProfiles Zinc finger RING-type profile. 213 254 IPR001841 -
Lal3g0542 273 Pfam Ring finger domain 212 254 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0542 Lal-Chr3 4035278 4039898 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0542 1 273 C3H Transcription Factor Family AT3G55530 75.000 2.43e-140 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0542 K16283 - gmx:100777936 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0542 3 4035278 4039898 Lal3g0542 3 4035278 4039898 ECH