Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0536 ATGGACTCTCCTCATTTTCCTTCTTCACCATCATCATCTTCTTCTTCTTCCTCTGAAAGGGACCCAACTTTCGAACCCGACGAGCCGAGAACGCCGTTGGCGGTGCGCCGTGCGTTGCAGTTTCTCAACTCCGATGAGCCTCAGATGAGGATCCAGGCCGCCCGTGATATACGGCGGCTCACCAAGACATCGCACCGGTGTCGCCGACTGCTTTCCGAGGCTGTCGGCCCACTCGTTTCCATGCTCCGATTCGACTCGGCCGAGTCGCAAGAACCCGCTCTCCTCGCTTTGCTTAATCTCGCCGTTAAAGATGAAAAGAATAAAATCAATATTGTCGAGGCCGGTGCATTAGAACCTATAATTAAATTCCTAAAGTCAGAAGATATAAATCTTCAGGAATCAGCAACTGCAGCTTTGCTCACACTATCTGCTTCTTCAACAAACAAACCAATCATCAGTGCTTGTGGAGCCATTCCTCTTCTTGTGGAGATTCTTAAAGATGGAAGTCCACAAGCTAAAGCTGATGCAGTAACAGCTCTATCTAATTTATCAACACGCCCTGATAATCTCAGCATCATACTGGACACAAACCCGACCCGTTTCATAGTCGACATCCTTAAAGCCTGCAAGAAGTCCTCAAAAACAGCTGAGAAATGCTGTGCTTTGATAGAATCTTTGGTGGATCATGATGAAGGAAGAACTGCATTAACTTGTGAAGAAGGTGGGGTTCTTGCAGTTGTGGAAGTTCTTGAAAGTGGCACTCTCCAAAGTAGGGAACATGCTGTTGGAGCATTATTGACAATGTGCAATATTGACAGATGTAAATATAGGGAACCAATCCTTAGAGAAGGTGTTATTCCAGGGCTTCTTGAACTTACTGTGCAAGGAACACCAAAGTCTCAAACAAAAGCTAGAACCCTTTTGCAGTTACTGAGAGAATCTCCTTATCCAAGATCTGAAATTCAACCTGACACTCTTGAGAATATAGTATGCAACATCATATCACAGATTGATGGTGATGATCAACCTGGTAAAGCAAAGAAAATGCTGGCTGAGATGGTTCAAGTCAGCATGGAACAGAGTTTAAGACATCTACAGCAAAGGGCTATTGTATGCACCCCTAGTGATCTGCCTATAGCTGGTTGTGTTTCTCAAGTTCCTTTCAAATGA 1170 0.4479 MDSPHFPSSPSSSSSSSSERDPTFEPDEPRTPLAVRRALQFLNSDEPQMRIQAARDIRRLTKTSHRCRRLLSEAVGPLVSMLRFDSAESQEPALLALLNLAVKDEKNKINIVEAGALEPIIKFLKSEDINLQESATAALLTLSASSTNKPIISACGAIPLLVEILKDGSPQAKADAVTALSNLSTRPDNLSIILDTNPTRFIVDILKACKKSSKTAEKCCALIESLVDHDEGRTALTCEEGGVLAVVEVLESGTLQSREHAVGALLTMCNIDRCKYREPILREGVIPGLLELTVQGTPKSQTKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQPGKAKKMLAEMVQVSMEQSLRHLQQRAIVCTPSDLPIAGCVSQVPFK 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0536 389 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 115 157 IPR000225 GO:0005515
Lal3g0536 389 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 12 372 - -
Lal3g0536 389 PANTHER U BOX DOMAIN-CONTAINING 12 372 - -
Lal3g0536 389 MobiDBLite consensus disorder prediction 1 20 - -
Lal3g0536 389 MobiDBLite consensus disorder prediction 1 31 - -
Lal3g0536 389 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 156 198 IPR000225 GO:0005515
Lal3g0536 389 Pfam Armadillo/beta-catenin-like repeat 148 184 IPR000225 GO:0005515
Lal3g0536 389 Pfam Armadillo/beta-catenin-like repeat 105 143 IPR000225 GO:0005515
Lal3g0536 389 Gene3D - 24 369 IPR011989 -
Lal3g0536 389 SMART arm_5 63 102 IPR000225 GO:0005515
Lal3g0536 389 SMART arm_5 145 185 IPR000225 GO:0005515
Lal3g0536 389 SMART arm_5 229 270 IPR000225 GO:0005515
Lal3g0536 389 SMART arm_5 104 144 IPR000225 GO:0005515
Lal3g0536 389 SUPERFAMILY ARM repeat 35 338 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0536 Lal-Chr3 3935814 3939215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0536 35 312 U-box Gene Family AT2G23140 34.286 2.03e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0536 - - gmx:100809684 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0536 3 3935814 3939215 Lal5g1185 5 14609469 14614510 LSH