Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0535 ATGGAGTTTACCTCCTTGTCACTTCATGGGGTCAATGTGCACCACATCAAATCTCTTCTTGAAGAAGAAGATGGCTCACAAAGCACTAATGGGCTTAGCAATGATTCAGCTATACCTCATTCTCCTCCACTATGTGGAAGTGGCAATGGTTATGTTTATAAGGGCACAAACACAAACTATCACCTTGAACAAGAAGAATCTCTGATCAACTTCAATGGCAACAATCTCATGCATCCTAGTGAATCTTTACTTAGCTTTCACTTGAAAGATAAGATTCATAATGAGTACTGTGTTTGGGAGAATAATTTGCTTCAAGGGTATAGCCAATGTAATCAGGTTAGTCCTAGAAACACAGGAGAATTGCGTTTGGTGCAAGATTTCAATTGCTTTCAAACTTCCAGTGGCTATAGCTCTATAATGAATTGTGCAAAAGAGAAGCAATATGGTGAAAGTTCATATGGTTGGCTCTACTCTGAACCAACCACCCTTGTTGATAGCCTCCAAGAGCCAGGAGCACAAGAACAAGTCATAAAAAAGCGCCCTTCTATGATTACTAGATTCATAAAACTATGTGAAATGAGAATGGTGAATGAAGCCAACTACTTTGTGTTTACACAGGGAGAGAACATGAAAGCTTCCAAGAAGCAATGCACAACTGAGAGCAAAACTTCAAAACCTAAGGCAAGTCTATCTAAGGATCCTCAAAGTGTGGCTGCCAAGAATAGAAGAGAGAGGATAAGTGAGCGAATGAAGGTCTTGCAAGAACTTGTGCCTAATGGCTCCAAGGTTGATTTGGTTACCATGCTGGAGAAAGCAATTAGTTATGTGAAGTTTCTTCAATTGCAAGTGAAGGTGTTGGCAACTGATGAATTTTGGCCTGTTCAAGGTGGAAAGGGTCCTGATATTTCTCAAGTAAAAGAAGCCATTGACGCCATTCTTTCATCCCAAAGAGAAAGTAGTTCAAGCTCAAAGTAG 975 0.401 MEFTSLSLHGVNVHHIKSLLEEEDGSQSTNGLSNDSAIPHSPPLCGSGNGYVYKGTNTNYHLEQEESLINFNGNNLMHPSESLLSFHLKDKIHNEYCVWENNLLQGYSQCNQVSPRNTGELRLVQDFNCFQTSSGYSSIMNCAKEKQYGESSYGWLYSEPTTLVDSLQEPGAQEQVIKKRPSMITRFIKLCEMRMVNEANYFVFTQGENMKASKKQCTTESKTSKPKASLSKDPQSVAAKNRRERISERMKVLQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKGPDISQVKEAIDAILSSQRESSSSSK 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0535 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 234 289 IPR036638 GO:0046983
Lal3g0535 324 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 19 318 - -
Lal3g0535 324 MobiDBLite consensus disorder prediction 215 236 - -
Lal3g0535 324 MobiDBLite consensus disorder prediction 215 242 - -
Lal3g0535 324 CDD bHLH_AtIND_like 231 293 - -
Lal3g0535 324 SMART finulus 236 285 IPR011598 GO:0046983
Lal3g0535 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 230 279 IPR011598 GO:0046983
Lal3g0535 324 Pfam Helix-loop-helix DNA-binding domain 240 280 IPR011598 GO:0046983
Lal3g0535 324 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 19 318 - -
Lal3g0535 324 Gene3D - 224 287 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0535 Lal-Chr3 3918015 3919684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0535 62 324 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 44.000 2.43e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal3g0535 HLH 4.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0535 - - lang:109345122 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0535 3 3918015 3919684 Lal5g1186 5 14624767 14626680 LSH