Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0527 ATGATGAATGTCTTTTTCTCGCCATATCTGACATGTTCTGTTTGCCACTCTGGATTGTGTTCTGGTTGCTTTGGCCAGTCTATTCGTGGAACAAGGCCTTTTCCATGGCAGCGTACTGATTTGTTTGAAGATAGCTTAAGAGCTGCAGGGATATCAGGAATAGATCTAGGCACAAAGTTGTATATTTCCAATTTGGACCATGGAGTAACCAATGGAGACATAAGGGAACTTTTCTCCGAGCTTGGAGACTTAAAGCGCTATGCTGTTCATTATGACAACAATGGACGTCCGAGTGGTTCAGCTGAAGTTGTCTATACTAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATATAATAATGTACTTTTGGATGGAAAGCCCATGAAGATTGAGATTGTTGGTGCCAATGCGGAATTACCTGTAACTGCTCGTGTGAATGTCACTGGGGTAACCGGGATGAGGAAGAGGACAGTTGTGATAACGCCTAGAGGTGGTCAAGCTGCAGGTCCAGCTGTGCCTAATCGTGGTGCTGGTTGGGGACGTCGTGGAGGCCCCAAGAATGGGAGTGGGCGTGGCAGGGGTGGAGTCCGTGGACGTGGCCGTGGCCGTGGCGGAGGCCGAGGAGGTCGTGGGAAAAAGGAGGCTGTTGAGAAGTCAGCTGAACAACTTGACAAGGAACTCGAAACATATCATGCTGAGGCCATGAACATCTCATGA 717 0.4812 MMNVFFSPYLTCSVCHSGLCSGCFGQSIRGTRPFPWQRTDLFEDSLRAAGISGIDLGTKLYISNLDHGVTNGDIRELFSELGDLKRYAVHYDNNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGANAELPVTARVNVTGVTGMRKRTVVITPRGGQAAGPAVPNRGAGWGRRGGPKNGSGRGRGGVRGRGRGRGGGRGGRGKKEAVEKSAEQLDKELETYHAEAMNIS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0527 238 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 27 237 - -
Lal3g0527 238 SMART FoP_duplication_2 162 238 IPR025715 -
Lal3g0527 238 SMART rrm1_1 59 131 IPR000504 GO:0003723
Lal3g0527 238 CDD RRM_THOC4 58 132 - -
Lal3g0527 238 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 135 IPR000504 GO:0003723
Lal3g0527 238 MobiDBLite consensus disorder prediction 207 221 - -
Lal3g0527 238 Pfam C-terminal duplication domain of Friend of PRMT1 178 232 IPR025715 -
Lal3g0527 238 MobiDBLite consensus disorder prediction 163 221 - -
Lal3g0527 238 Gene3D - 52 218 IPR012677 -
Lal3g0527 238 SUPERFAMILY RNA-binding domain, RBD 58 208 IPR035979 GO:0003676
Lal3g0527 238 Coils Coil 213 238 - -
Lal3g0527 238 PANTHER THO COMPLEX SUBUNIT 4C 27 237 - -
Lal3g0527 238 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 128 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0527 Lal-Chr3 3856119 3861344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0527 57 138 Eukaryotic Initiation Factors Gene Family AT2G23350 34.146 1.69e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0527 K12881 - gmx:100801491 291.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0527 3 3856119 3861344 Lal5g1196 5 14731460 14736978 LSH
Lal3g0527 3 3856119 3861344 Lal18g1312 18 15630174 15635320 LSH