Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0525 ATGGGAAGACAACCTTGTTGTGACAAAGTTGGGTTGAAGAAAGGGCCATGGACTGCAGAAGAAGATATGAAGCTTATCAACTTTATTCTCACTAATGGCCAATGTTGCTGGAGAGCTGTTCCTAAGCTAGCAGGGTTGTTAAGGTGTGGGAAAAGTTGCAGGCTGAGGTGGACAAATTACCTGAGACCAGATCTCAAAAGAGGTATTCTATCAGAAGATGAGGAGAAAATGGTCATTGATCTTCATGCTAAGCTTGGAAATAGATGGTCTAAGATTGCTTCTCATCTTCCTGGAAGAACCGATAATGAAATCAAGAATCAATGGAATACTCACATAAAGAAAAATCTCAAGAAAATGGGAATTGACCCTATTACCCACAAGCCACTTTCTAATGCAAATGAGCAAACTCAAACCCAACCAGATCAACAGACACATCAACCATTCGAAAAACAACATCAGCAACAATCTTTGCCAATTAACAAGGACCCCAAATATGAATCTGATAGTAACCATAATAAAGAGTCAGAGACTTCAACTGAGTCATCAACTATCATTGATGCTATAGAAGAAGACAAAACAGTAACACCCTTATTTGACTCAATGGAGATAATAATGAATGAGTTCTGCATAGATGAAGTTCCAATGATAGAGTCCAATAAGATTCTTGTTCCATATACTCCATCCACTTCAACTAGTACAACATCTTCATCTTCTTCAAATTCAACAAACTTCATTGAAGACTTTCTGCTCCAAGATTTTGAGTTGTCTCATATGCACAATGGCAATGAGAACAACAATAGCAGCATGGCATTGTGGGATGAAGACTTTATGAGAAGTTGGGATTTGCTGATAAAAGATGATGATAGCAGAAAGGAAGTGTTTGATTGTTCTCTTAGTCAATACCCAAGAATTGTTGTGGATTCAGAATCTTGGGACTATGGGTTGTTTTGA 951 0.3796 MGRQPCCDKVGLKKGPWTAEEDMKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGILSEDEEKMVIDLHAKLGNRWSKIASHLPGRTDNEIKNQWNTHIKKNLKKMGIDPITHKPLSNANEQTQTQPDQQTHQPFEKQHQQQSLPINKDPKYESDSNHNKESETSTESSTIIDAIEEDKTVTPLFDSMEIIMNEFCIDEVPMIESNKILVPYTPSTSTSTTSSSSSNSTNFIEDFLLQDFELSHMHNGNENNNSSMALWDEDFMRSWDLLIKDDDSRKEVFDCSLSQYPRIVVDSESWDYGLF 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0525 316 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal3g0525 316 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal3g0525 316 CDD SANT 16 61 IPR001005 -
Lal3g0525 316 SMART sant 66 114 IPR001005 -
Lal3g0525 316 SMART sant 13 63 IPR001005 -
Lal3g0525 316 Gene3D - 11 67 - -
Lal3g0525 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal3g0525 316 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 291 - -
Lal3g0525 316 Gene3D - 71 183 - -
Lal3g0525 316 CDD SANT 71 112 IPR001005 -
Lal3g0525 316 PANTHER MYB TRANSCRIPTION FACTOR 1 291 - -
Lal3g0525 316 MobiDBLite consensus disorder prediction 128 163 - -
Lal3g0525 316 MobiDBLite consensus disorder prediction 122 188 - -
Lal3g0525 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal3g0525 316 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lal3g0525 316 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal3g0525 316 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0525 Lal-Chr3 3841594 3843790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0525 1 289 MYB Transcription Factor Family AT1G66230 53.333 4.61e-91 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal3g0525 Myb_DNA-binding 5.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0525 K09422 - gmx:100794413 451.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0525 3 3841594 3843790 Lal5g1197 5 14745647 14748617 LSH
Lal6g0304 6 1949834 1952098 Lal3g0525 3 3841594 3843790 PCT