Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0510 ATGCCCTTGGAGAAAGGGATTTTCATTGAAACCACTTCAACAACTGCACCTGATCTTTCTCTTCATATAAGCCCTCCAAGCACCACTTCTTCCTCTTCTTCTTTGATTTGCAACATCAATAACACCCTAGTAAGTGGTGGTGCCACCAATTATGAACCTTACAATTCTTCAGCAACCACTAATTTCCCTTCTAGGACTGTTTCTCAAGCTCACACTGAGCTTTCTCTTGGAAGAAATTTCAGTGGTGGAGGAACATCTCTTGAGGAAACACCACCACACCATCACCACAGAAACCCTTATTATCAAAGCCACCAAGCTCATTTCCATAATCTTCACCGTCAAGTGTCTAACACTAGTAGTAGTTGTGGTGGTGCTACTACAACAACAACAACATGTACTAGGTTGAATCACACAAATTATGGGGTTTCCTTGCTTGATGTGTCATCTGAAGGTTTGAGACCAATCAAGGGGATTCCAGTGTATCACAGCCGTTCATTTCCTTTTCTTCCTGTAGAGAATACAAGAGACAAGGATCATCATCATCCCAAGATAAATCCTCACATGCCTTCATATCCTCCTTTGTCCTCTTCTTATCCTTCTTCTTCTTCCTCACCCTACTTCGCCGCCGCGGCACCCGGTTTGGATCCCATGTCCTTTCTGAAATCCAATACCTTCAATGGGCCCACGGCGGCCTATAGGGCTGCAGCGGCAACCATGTTTAATGAGATTTCCGGTGAGGCTTTCAAATCTCATTATCCATTGCACCATCACTCACACTATGGGGTTGGACCCTCTCATCATGAGGCCTCTTCAGCAGGGTTGATGAGATCAAGGTTTTTGCCTAAGTTACCAACAAAAAGAAGCATGAGAGCACCTAGAATGAGATGGACAAGCACCCTCCATGCTAGATTTGTTCATGCAGTTGAGCTTCTTGGTGGCCATGAAAGAGCTACTCCAAAGTCAGTTCTTGAGCTCATGGATGTGAAGGATCTCACATTAGCTCATGTAAAAAGCCATTTGCAGATGTATCGAACTGTTAAGACTACCGACAAACCTGTAGCTTCTTCAGCCCTTTCAGATGGATCTGGAGAGGATGACATGTCTCCGATCGGCAGTAGCGGTAGCGGCGGTCATCACCAATTTTCCGACCAAAGAGGCTGTCTGGATCGGCCAGTGCAACAAGACATGGACTATTCTTCCACCACCATACTATGGAGTAACTCTTCAAGAAAAGGAGAGCAATGGCCACAAACTAGTGGTAACAACATAGATGGTTTTAGACCACCCATCTTCCAGACACAACCAATATCAGGAGGGCATCAAATTCAGGAATGTGATTCAACCCAATTGAAGAATAGTTTGTCAAGATCTAATTTAGAGTGCAAAAATCCAAGCTTGGAGTTCACATTAGGGAGACCAGATTGGAATGGCAAAGGACAAGCCTAA 1446 0.4454 MPLEKGIFIETTSTTAPDLSLHISPPSTTSSSSSLICNINNTLVSGGATNYEPYNSSATTNFPSRTVSQAHTELSLGRNFSGGGTSLEETPPHHHHRNPYYQSHQAHFHNLHRQVSNTSSSCGGATTTTTTCTRLNHTNYGVSLLDVSSEGLRPIKGIPVYHSRSFPFLPVENTRDKDHHHPKINPHMPSYPPLSSSYPSSSSSPYFAAAAPGLDPMSFLKSNTFNGPTAAYRAAAATMFNEISGEAFKSHYPLHHHSHYGVGPSHHEASSAGLMRSRFLPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPVASSALSDGSGEDDMSPIGSSGSGGHHQFSDQRGCLDRPVQQDMDYSSTTILWSNSSRKGEQWPQTSGNNIDGFRPPIFQTQPISGGHQIQECDSTQLKNSLSRSNLECKNPSLEFTLGRPDWNGKGQA 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0510 481 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 292 345 IPR006447 GO:0003677
Lal3g0510 481 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 481 IPR044847 GO:0000976|GO:0006355|GO:0010158
Lal3g0510 481 MobiDBLite consensus disorder prediction 405 429 - -
Lal3g0510 481 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 481 - -
Lal3g0510 481 SUPERFAMILY Homeodomain-like 289 345 IPR009057 -
Lal3g0510 481 MobiDBLite consensus disorder prediction 366 380 - -
Lal3g0510 481 MobiDBLite consensus disorder prediction 351 385 - -
Lal3g0510 481 Gene3D - 291 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0510 Lal-Chr3 3710986 3717067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0510 153 478 G2-like Transcription Factor Family AT5G16560 48.397 3.28e-76 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal3g0510 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0510 - - ccaj:109796302 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0510 3 3710986 3717067 Lal5g1215 5 14880948 14886814 LSH
Lal3g0510 3 3710986 3717067 Lal22g0294 22 1858364 1864015 PCT
Lal3g0510 3 3710986 3717067 Lal6g0320 6 2047733 2052949 PCT
Lal22g0294 22 1858364 1864015 Lal3g0510 3 3710986 3717067 PCT
Lal6g0320 6 2047733 2052949 Lal3g0510 3 3710986 3717067 PCT