Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0502 ATGACAATGGGAGAACACTCTTTAGCACCACTTACATTTGACAGAACTGCTGAACAGGCAATTGTATCTATAAAGAAAGGTGCATACTTACTTAAATGTGGTCGTCGAGGAAAACCAAAGCTCTGCCCGTTCAGACTTTCTCCGATTTGTTATGCGAATATCAAAGTTAGAAGATCCACATTTGTGAATGTTCCAAAATATAGTTCCCCTTCTCTTTGGCTTTTGCATGATGTTCATGTCCTTACTGTTCTCTCAAATAAGCTTCTAATTGAGTTGTCATTTGAAGCACTAAGGCTAGATGAGAGGAATTTGATATGGTACTCCGGGCAGCAGGAAAAGCATTTGCGATTGAGCACAGTTACCGAAATTATTCAAAGGCAGGGAAATATAAGGTCCCATGGGCATGAGGAACATGGAAAGGATGACCATTCATTTTCACTAATCTATGCTAATGGTGAACGATCTCTTGATCTGATATGCAAGGACAAAGCACAGGCTGCTTTGTGGTTTGTCGGCTTGAAAGCTGTGATTCCTACGTGCCAGGATCCTAGGCCGTTTAGCAGTTTAAGAAGCTGCAAAGGGGTGCAGAGTTGTGTTAGTAGTCCAGCTGGAATCTTCCGAAGAAAGAAAAGTCTTGGCCTTCTGGACGAATCTTCTCAACTAACACAGGTACACAGCGTATGTGCAAGTCCTACTTTGTCACTTTCAGAAAGGTGCTTTTCTGATGGCTTGTCATATACATGTGATAACATTTATTCCAGAACTCAAGGAGTAACAGATAATTCAGTCCCAAGTTCGTCATATATAGATGCCGATATTCTTAGTAAGGTTGAACCACTGCATCTTGACAGGGAGTACAAGAAAATTTTGTCCTATAGGTCTCTGATGCCTCCTGCCTCCCCGCGTATACGAAATAGCAATGCATTAAAGGATGTAATGGTATGGGGTGGAGGTATTGGAGTTCATTTAGGGATTGTGAATGAAAGGTTTGTCAATCAGCACAGGATTTATTCTTTAGTGCCGAAGTTACTGGAATCAACTATGATGTTAGATGTACAAAATATAGCCCTAGGAAGTAATCATGCTGCCTTGGTTACAAAACAAGGTGAAGTTTTTTGCTGGGGTCAAGGGAAGTGGGGAAGGCTGGGGCAAAAAATTGATATAGACATTTTCTCTCCGAAACTAGTTGATTCTCTGAACGGTATTCATGTAAAACATGTTGCATGTGGCGAGTATCATACATGTGCTTTGACAGATTCTGGTGAAGTATATACGTGGGGGAATGATGCTTGTAATGCAGATTTGGGTGATGAATGGAGAACTAGATGTCAGTGGATACCACATAAACTTTCCGGTCCTTTAGATGGTATTAGTATTTCAAGTATTGCTTGTGGGGAATGGCATACTGCAATTGTCTCCAGCTGTGGGCGGTTATTTACATATGGAGAAGGTACATTTGGAGTTCTTGGCCACGGCAACCTTAGGAGCTTTTCTCAGCCTAAAGAAGTCGAGTCTCTAAGTGGTCTAAGGGTGAAGTCTGTTGCTTGTGGATCATGGCATACAGTAGCTATTGTTGAAGTCATTGCTGACCGTTTTAGGTGTAATACTGCAAATGGTAAGCTGTTCACATGGGGTGATGGGGATGATGGGAGGCTCGGTCACGCTGATAATGGAAGAAAGCTTATACCAACATGTGCTTCACAACTTGTTGACTATGATTTTGTTCAAGTGTCTTGTGGAAGAACGTTGACTGTTGCACTTACTACTATGGGAAAAGTTTTTGCAATGGGAAGTACAAAATATGGACAGCTAGGAAATCCACATGCTAGGGGCAAAGCAATTATGGTTGAAGGACTGCTTAAACAAGAGTTTGTTAAAGTGATATCATGCGGGAGTGTCTACACATGGGGCAAGGGTCAAAATGGTCAACTCGGGCTAGGCGATACCGAAGACAGGAATACACCTTCTTTCGTTCAAACTCTAAGAGACAGGCATGTAGATACTATAATTTGTGGCCCAAGCTTCACAGTTGCAATCTGTTTACACAAACCTATTTCAATCGGTGACCAGTCAGTTTGTAGTGGGTGTACGTTGCCGTTTGGGTTCACAAGGAAGAAGCATAACTGTTATAACTGTGGATTTCTGTTTTGTCATGCTTGTAGTAGTAAAAAGGCTATAAATGCATCTCTAGCCCCAAGTAAGAGCAAGGCTTTTCGGGTTTGTGATCAGTGCTTCGATAAACAACAAGGAAGTGCTTATTCTGGAATGGCATCAAAGTCCAGAAGTCACAACACTCAGCAGGTGCTGAAGCATCAAAACAAAATTCCCTATCTGACTGAAGATAGGGGAGAAACAAATGTGACACAGGATCCGTTGTTGTCTTTCAGTCAATCATGTTACAGGAAAAGCATGCCGAGTGGACGGAAGGACGGGAAAAACCAACAAGAAAGCCAGCAGCACTTAGAAGATAGTTCTCCGACATTTAGTGGAGTGTCGAGATGGGGGCAAGTTCCATGTCCTGAATTATTTAATGTCAATTGTACGAAAAATTCAGCTATACATGCTTCTTCATCGAAACATAAATCAGTTACTGTTTCACCATTGAATATAGAATCTGTAGTATGCAACTTCCCTGTTGCTGAGACAGATACAACAAATTCTGATAAGATGCTCATAGAAGAAGTTCAGAGGCTGAGAATTGAGGTAATGACTCCGGCTAGGAGACTTGAAGAGAAGTGTGAGCTCAAAAACCAAAAAATACAAGAGTATCAACAAAAAGTTGAGGAGAGCTGGCTTGTGGCTAAGGACGAAGCTGCTAAGAGTAAGGCAGCAAAAGAGGTCATAAAAGCTTTGGCATTAAGGCTTCATACATTGTCAGGAAATGACAATGGTGGACAAGAGGAAAAGGTTATACATGAATGTCTACCTACTTTGGCACACATACAAACAGATATCAAGAGTCCAAAAGTTGGCAACATGGACAGTCTATCTAATTCCCCGATAGTATTTTCTGATACCGTAAAATCCAAATTTGGGAGAGGTATGCTCCTAAAAAATGATAAGTTATTGGAGAACTCTAACTTCAATAGCGCAGAATTGCAAGAAGACAGTGCGAACAGCTTGAAGGCTGAATGGGTAGAACAGTATGAGCCTGGTGTTTACATCACATTAACAACCTTATCATGTGGGAAAAAAGGCCTTAAGCGCGTGAGATTTAGCCGGAAACGATTCTCGGAGAAGGAAGCTGAAAGGTGGTGGGAAGAGAATCAAGCTACAGTATACCATAAGTATGATATTGAAGGATATACAAACACTAGATAA 3321 0.414 MTMGEHSLAPLTFDRTAEQAIVSIKKGAYLLKCGRRGKPKLCPFRLSPICYANIKVRRSTFVNVPKYSSPSLWLLHDVHVLTVLSNKLLIELSFEALRLDERNLIWYSGQQEKHLRLSTVTEIIQRQGNIRSHGHEEHGKDDHSFSLIYANGERSLDLICKDKAQAALWFVGLKAVIPTCQDPRPFSSLRSCKGVQSCVSSPAGIFRRKKSLGLLDESSQLTQVHSVCASPTLSLSERCFSDGLSYTCDNIYSRTQGVTDNSVPSSSYIDADILSKVEPLHLDREYKKILSYRSLMPPASPRIRNSNALKDVMVWGGGIGVHLGIVNERFVNQHRIYSLVPKLLESTMMLDVQNIALGSNHAALVTKQGEVFCWGQGKWGRLGQKIDIDIFSPKLVDSLNGIHVKHVACGEYHTCALTDSGEVYTWGNDACNADLGDEWRTRCQWIPHKLSGPLDGISISSIACGEWHTAIVSSCGRLFTYGEGTFGVLGHGNLRSFSQPKEVESLSGLRVKSVACGSWHTVAIVEVIADRFRCNTANGKLFTWGDGDDGRLGHADNGRKLIPTCASQLVDYDFVQVSCGRTLTVALTTMGKVFAMGSTKYGQLGNPHARGKAIMVEGLLKQEFVKVISCGSVYTWGKGQNGQLGLGDTEDRNTPSFVQTLRDRHVDTIICGPSFTVAICLHKPISIGDQSVCSGCTLPFGFTRKKHNCYNCGFLFCHACSSKKAINASLAPSKSKAFRVCDQCFDKQQGSAYSGMASKSRSHNTQQVLKHQNKIPYLTEDRGETNVTQDPLLSFSQSCYRKSMPSGRKDGKNQQESQQHLEDSSPTFSGVSRWGQVPCPELFNVNCTKNSAIHASSSKHKSVTVSPLNIESVVCNFPVAETDTTNSDKMLIEEVQRLRIEVMTPARRLEEKCELKNQKIQEYQQKVEESWLVAKDEAAKSKAAKEVIKALALRLHTLSGNDNGGQEEKVIHECLPTLAHIQTDIKSPKVGNMDSLSNSPIVFSDTVKSKFGRGMLLKNDKLLENSNFNSAELQEDSANSLKAEWVEQYEPGVYITLTTLSCGKKGLKRVRFSRKRFSEKEAERWWEENQATVYHKYDIEGYTNTR 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0502 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 476 527 IPR000408 -
Lal3g0502 1106 MobiDBLite consensus disorder prediction 802 829 - -
Lal3g0502 1106 Pfam FYVE zinc finger 690 747 IPR000306 GO:0046872
Lal3g0502 1106 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 689 758 IPR013083 -
Lal3g0502 1106 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 97 1099 - -
Lal3g0502 1106 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 47 - -
Lal3g0502 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 310 368 IPR000408 -
Lal3g0502 1106 Gene3D - 85 182 IPR011993 -
Lal3g0502 1106 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 687 749 IPR017455 -
Lal3g0502 1106 Gene3D - 292 530 IPR009091 -
Lal3g0502 1106 Gene3D - 534 688 IPR009091 -
Lal3g0502 1106 SUPERFAMILY FYVE/PHD zinc finger 688 751 IPR011011 -
Lal3g0502 1106 CDD FYVE_like_SF 693 745 - -
Lal3g0502 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 538 587 IPR000408 -
Lal3g0502 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 420 471 IPR000408 -
Lal3g0502 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 631 679 IPR000408 -
Lal3g0502 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 369 417 IPR000408 -
Lal3g0502 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 476 524 IPR000408 -
Lal3g0502 1106 Coils Coil 906 926 - -
Lal3g0502 1106 Pfam Transcription factor regulating root and shoot growth via Pin3 1042 1097 IPR013591 -
Lal3g0502 1106 SUPERFAMILY RCC1/BLIP-II 311 683 IPR009091 -
Lal3g0502 1106 PRINTS Chromosome condensation regulator RCC1 signature 311 327 IPR000408 -
Lal3g0502 1106 PRINTS Chromosome condensation regulator RCC1 signature 371 387 IPR000408 -
Lal3g0502 1106 PRINTS Chromosome condensation regulator RCC1 signature 421 437 IPR000408 -
Lal3g0502 1106 PRINTS Chromosome condensation regulator RCC1 signature 462 478 IPR000408 -
Lal3g0502 1106 PRINTS Chromosome condensation regulator RCC1 signature 478 492 IPR000408 -
Lal3g0502 1106 PRINTS Chromosome condensation regulator RCC1 signature 626 647 IPR000408 -
Lal3g0502 1106 PANTHER F12P19.9 PROTEIN 16 47 - -
Lal3g0502 1106 PANTHER F12P19.9 PROTEIN 97 1099 - -
Lal3g0502 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 421 475 IPR000408 -
Lal3g0502 1106 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 514 524 IPR000408 -
Lal3g0502 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 369 420 IPR000408 -
Lal3g0502 1106 SUPERFAMILY PH domain-like 98 177 - -
Lal3g0502 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 631 682 IPR000408 -
Lal3g0502 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 539 590 IPR000408 -
Lal3g0502 1106 ProSiteProfiles BRX domain profile. 1043 1098 IPR013591 -
Lal3g0502 1106 CDD PH_PLC_plant-like 15 177 - -
Lal3g0502 1106 SMART fyve_4 681 750 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0502 Lal-Chr3 3594524 3602567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0502 1044 1102 Major Intrinsic Protein MIP AT1G31880 44.068 4.93e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0502 - - adu:107481014 1575.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1221 5 14969181 14976759 Lal3g0502 3 3594524 3602567 LSH