LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal3g0492	ATGATGCTGCAACTAACCTTGATTTGGTGGTTGACATGGTGGAGCACTAACCACCATGGTGCAGTTGCAGACCCTCAGACACATCTACTAAACATTGGTTGCAGTCCATTCAATGCAACCTTATCCTTCTTTGGCAGTATGAATTCAACACTTTCAAAGTTGAGAGCACAAGTTAGCAACCAAAGCAAGCATTTTGTCACAGCACAAGAAGCCAAGGGTGAGATTCTTGCATTTTCTATGTTTCAGTGCAGAAATTACCTCTCCAATAAGGATTGTCTTGCTTGCTTTGACACTGCAAACACCCAAATTCGCAACTGCTTTGATGCTAATGGCGCTAGAATCATATATGATGGCTGCTTCCTTAGGTATGAGAGTGAGAGTTTCTATGATCAAACCACTCAACCTGGTAATGGTGTATCATGTGGTAACAAAACTTCAAAGGAAACCCAATTTGATGCTACAGGAAAACAAGTACTAATGGATCTTCAAATAGCAACACCAAGAATTAAAGGATTTTATGCAGCTACAAAGACACAAGTGGGTGGAAGTGCAATTTATGCTACTGCACAATGTGTTGAAACTGCCACAGAAAGTGATTGTCTTGCATGCATGGTAGTTGGATATAATAACTTACAAAGTTGTCTTCCTAAAACATATGGTAGGGCATATGATGCTGGTTGTTTCATGAGATATTCTGACACAGCATTCTTTGCTGATAACCAAACCATTGATATTACATCATATTTGAAACAAGGAGGAGGTTCTACTAAGAAATGGGCCATTATAGGTGGTGGTGTAGGTCTTGTTGTTGTGATCCTCCTTATATTATTTGTCTGGCATAGACGATTCAAAAAACCAAAGAGGGTCCCTAGAGGTGACATATTGGGAGCAACAGAGTTGAAAGGTCCACTTATTTACAAGTACAGAGATTTGAAAGCTGCAACAAAGAATTTCAGTGATGAAAATAAACTAGGAGAGGGAGGTTTTGGTGATGTATACAAGGGTACACTGAAAAATGGAAAAGTTGTTGCAGTTAAAAAATTGATTTTGGGTCAATCCACCAAGATGGAGGATGATTTTGAGAGTGAAGTCAAGCTTATCAGTAATGTTCATCATCGAAATCTGGTTAGACTTCTCGGTTGCTGCAGTAAAGGCCAAGAGAGAATTCTTGTTTATGAATACATGGCAAATAGCAGCCTTGACAGATTCTTATTTGGTAATAAAAAAGGTTCCCTAAACTGGAAACAAAGGTATGGTATAATTTTAGGCACTGCAAGAGGACTAGCTTATCTACATGAGGAATTCCATGTTTCTATCATACATAGAGATATAAAGACAGGCAATATTCTCTTAGATGATGATTTTCAGGCCAAAATTGCTGATTTTGGGTTGGCGCGACTTTTACCCGGGGATCGATCTCATCTAAGCACAAGATTTGCAGGAACATTGGGATACACAGCACCTGAATATGCAATCCATGGTCAATTATCAGAGAAAGCTGATACCTATAGTTATGGCATTGTTGTCCTTGAAATAATAAGCGGTAATAAAAGTACTGAAGTGAAGATTGATGATGATGGTCATGAATACCTTCTTCAACGAGCATGGAAATTATATGAGAGAGGCATGCACTTGGAGTTGGTGGACAAGGACTTGGACCCTGATGAATTTGATGCAGAGGAAGTAAGGAAAATCATAGAGATTGCTTTGTTGTGCACTCAAGCATCGGCTGCGGCGAGGCCAACAATGTCTGAAGTAGTAGTCCTACTCATAAGCAAGAGTTTACTGGAACACTTGCAACCAGGTATGCCTGTGTTTGTTGACTCGAATCTAAGGGCTCGAGAGGAAAAATCTACTTCAACTGGTGGTTCTTCTACATCCAATGCTACTGCCTCCATTTCTGTTCTATCGGCACGATGA	1920	0.3984	MMLQLTLIWWLTWWSTNHHGAVADPQTHLLNIGCSPFNATLSFFGSMNSTLSKLRAQVSNQSKHFVTAQEAKGEILAFSMFQCRNYLSNKDCLACFDTANTQIRNCFDANGARIIYDGCFLRYESESFYDQTTQPGNGVSCGNKTSKETQFDATGKQVLMDLQIATPRIKGFYAATKTQVGGSAIYATAQCVETATESDCLACMVVGYNNLQSCLPKTYGRAYDAGCFMRYSDTAFFADNQTIDITSYLKQGGGSTKKWAIIGGGVGLVVVILLILFVWHRRFKKPKRVPRGDILGATELKGPLIYKYRDLKAATKNFSDENKLGEGGFGDVYKGTLKNGKVVAVKKLILGQSTKMEDDFESEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANSSLDRFLFGNKKGSLNWKQRYGIILGTARGLAYLHEEFHVSIIHRDIKTGNILLDDDFQAKIADFGLARLLPGDRSHLSTRFAGTLGYTAPEYAIHGQLSEKADTYSYGIVVLEIISGNKSTEVKIDDDGHEYLLQRAWKLYERGMHLELVDKDLDPDEFDAEEVRKIIEIALLCTQASAAARPTMSEVVVLLISKSLLEHLQPGMPVFVDSNLRAREEKSTSTGGSSTSNATASISVLSAR	639

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal3g0492	639	MobiDBLite	consensus disorder prediction	614	639	-	-
	Lal3g0492	639	Pfam	Protein tyrosine and serine/threonine kinase	321	588	IPR001245	GO:0004672\|GO:0006468
	Lal3g0492	639	CDD	STKc_IRAK	324	587	-	-
	Lal3g0492	639	ProSiteProfiles	Protein kinase domain profile.	318	596	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lal3g0492	639	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	17	633	-	-
	Lal3g0492	639	ProSitePatterns	Protein kinases ATP-binding region signature.	324	347	IPR017441	GO:0005524
	Lal3g0492	639	PANTHER	CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN	17	633	-	-
	Lal3g0492	639	MobiDBLite	consensus disorder prediction	616	639	-	-
	Lal3g0492	639	Pfam	Salt stress response/antifungal	39	125	IPR002902	-
	Lal3g0492	639	Pfam	Salt stress response/antifungal	141	233	IPR002902	-
	Lal3g0492	639	SUPERFAMILY	Protein kinase-like (PK-like)	301	590	IPR011009	-
	Lal3g0492	639	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	439	451	IPR008271	GO:0004672\|GO:0006468
	Lal3g0492	639	Gene3D	-	31	128	IPR038408	-
	Lal3g0492	639	Gene3D	-	138	236	IPR038408	-
	Lal3g0492	639	ProSiteProfiles	Gnk2-homologous domain profile.	25	128	IPR002902	-
	Lal3g0492	639	SMART	serkin_6	318	596	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lal3g0492	639	ProSiteProfiles	Gnk2-homologous domain profile.	133	236	IPR002902	-
	Lal3g0492	639	Gene3D	Phosphorylase Kinase; domain 1	294	394	-	-
	Lal3g0492	639	Gene3D	Transferase(Phosphotransferase) domain 1	395	598	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal3g0492	Lal-Chr3	3478709	3487706	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal3g0492	2	634	Receptor kinase-like Gene Family	AT1G70520	37.077	3.74e-130	395

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Lal3g0492		PK_Tyr_Ser-Thr	5.3e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal3g0492	-		-	gmx:112997608	911.753