LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal3g0491	ATGCACCTACAATTATTACTCAAGCTTCAACCCTTAACCTTCATATTGTGGTCATGGTGGAGCATTCATGATGCAGAAGCAGATCCTCAAATTCTTCTACTCAACAAAGGTTGCAGCCAATACAACGCAACCAACTTATCAAATTTTAACCAAAATCTAAACGCAAGTTTATCAGACATAAAATCACAGGTTACCAACCAAAGCAAGCACTTTGCAACAGCACATCAATCCTTAGGAGCAGACCCTGTCTATGCTTTGTTCCAATGTAGGAACTACCTCTCCAACACTGACTGCGCCGCCTGTTTCGCCACCGCCGCCACCCAAATCCGCAATTGCTCTGCCGGGGCCAATGGTGCCCGTGTCATCTATGATGGTTGCTTCCTTAGGTATGAGAGCAATGGCTTCTTTGATGAGACAACTCTTCCTGGCAACAGTATGATTTGTGGAAACAACACTGCAAATGGAGGAGCAACTGCATTTAGTGGAGCTGCACAAAAAGTACTAAAGGATCTACAAAAAGCAACACCAAAAGTTACTGGTTTCTTTGCAGCTACAAAGACACAAGTAGCTGGTAGTGCACTATATGCAATTGCACAATGTGCTGAAACTGTCACAGAAAATGGTTGTGTGAATTGCTTGAATGTTGGATACACCAACATAGAAAGTTGTCTTCCAAATACAGATGGTAGGGCATTTGATGCTGGATGTTTTATGAGGTATTCAGAGACATCATTCTTTGCTGATAACCAAGCCATTGATATCACACCTTTCTTAAAACAAGGAGGATCAAGAAAGAAGGGTGCCATTATTGGTGGTGTTGTTGGAGGTGTTGGTCTTATTGTGATTCTCCTTGCATTATTTGTTTGGCTTAAACTAAACAAGAAAACTAAGAGGGCTCCTAGAGGTGATATATTGGGAGCAACTGAGTTGAAAGGTCCAGTTAACTATAGGTATAAAGATTTGAAGTCTGCAACAAAAAATTTCAGTGATGAAAATAAACTAGGAGAAGGAGGTTTTGGAGATGTATACAAGGGTACTCTGAAAAATGGGAAAATTGTTGCAGTGAAGAAATTACTTTTAGGCCAATCAAACAAGATAGATGAAAATTTTGAAAGTGAAGTGAAGCTTATAAGTAATGTTCATCATAGGAATCTGGTTAGACTTCTTGGATGTTGCAGTAAAGGCCAAGAGAGAATCCTTGTTTATGAATACATGGCAAACAACAGTCTTGACAGATTCTTATTTGGTGAAAAGAAGGGTTCTCTTAACTGGAAACAACGGTACGATATAACTTTAGGCATGGCCAGGGGTTTGGCTTATTTACATGAGGATTTCCATGTTTGTATCATACATAGAGATATAAAGACTAACAATATTCTCTTAGATGATGATCTTCAGCCTAGAATTGCTGATTTTGGGTTGGCTAGGCTTCTACCAGAGGACAAATCTCATCTTAGCACAAGATTTGCAGGAACATTGGGATACACAGCACCTGAGTATGCACTACATGGCCAGCTATCGGTGAAGGCCGATACATACAGCTACGGTGTTGTAGTCCTAGAAATCGTAAGTGGCCAAAAGAGCAGTGAATTGAGGGCTGATGTTGATGGTGATTTCCTCCTTCAAAGGGCATGGAAACTATATGAGAGAAATATGCACTTGGAGTTGGTGGATAAGACATTGGAGAGTGATGAGTATGAGCCAGAAGAAGTGAAGAAAATCATAGAGATTGCTCTTCTGTGCACTCAAGCATCAGCTGCAACAAGACCAACAATGTCTGAAGTAGTTGTCTTACTCAAAAGCAAGAATTTACTACAGAATATGAAACCAACCATGCCTGTTTTTGTTGAATCTAACTATAGGTCCCGGCCAGAAACTTCTACCTCAAGTGGTTCCTCTACATCCAATGCTACTGTTTCCACTTCTATACTATCTGCTAGATGA	1944	0.4038	MHLQLLLKLQPLTFILWSWWSIHDAEADPQILLLNKGCSQYNATNLSNFNQNLNASLSDIKSQVTNQSKHFATAHQSLGADPVYALFQCRNYLSNTDCAACFATAATQIRNCSAGANGARVIYDGCFLRYESNGFFDETTLPGNSMICGNNTANGGATAFSGAAQKVLKDLQKATPKVTGFFAATKTQVAGSALYAIAQCAETVTENGCVNCLNVGYTNIESCLPNTDGRAFDAGCFMRYSETSFFADNQAIDITPFLKQGGSRKKGAIIGGVVGGVGLIVILLALFVWLKLNKKTKRAPRGDILGATELKGPVNYRYKDLKSATKNFSDENKLGEGGFGDVYKGTLKNGKIVAVKKLLLGQSNKIDENFESEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANNSLDRFLFGEKKGSLNWKQRYDITLGMARGLAYLHEDFHVCIIHRDIKTNNILLDDDLQPRIADFGLARLLPEDKSHLSTRFAGTLGYTAPEYALHGQLSVKADTYSYGVVVLEIVSGQKSSELRADVDGDFLLQRAWKLYERNMHLELVDKTLESDEYEPEEVKKIIEIALLCTQASAATRPTMSEVVVLLKSKNLLQNMKPTMPVFVESNYRSRPETSTSSGSSTSNATVSTSILSAR	647

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal3g0491	647	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	449	461	IPR008271	GO:0004672\|GO:0006468
	Lal3g0491	647	ProSiteProfiles	Gnk2-homologous domain profile.	142	245	IPR002902	-
	Lal3g0491	647	Gene3D	Phosphorylase Kinase; domain 1	293	404	-	-
	Lal3g0491	647	ProSiteProfiles	Gnk2-homologous domain profile.	31	135	IPR002902	-
	Lal3g0491	647	Gene3D	Transferase(Phosphotransferase) domain 1	405	614	-	-
	Lal3g0491	647	Pfam	Protein tyrosine and serine/threonine kinase	331	597	IPR001245	GO:0004672\|GO:0006468
	Lal3g0491	647	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	22	644	-	-
	Lal3g0491	647	SMART	serkin_6	328	605	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lal3g0491	647	ProSitePatterns	Protein kinases ATP-binding region signature.	334	357	IPR017441	GO:0005524
	Lal3g0491	647	MobiDBLite	consensus disorder prediction	617	647	-	-
	Lal3g0491	647	CDD	STKc_IRAK	334	600	-	-
	Lal3g0491	647	MobiDBLite	consensus disorder prediction	620	647	-	-
	Lal3g0491	647	Pfam	Salt stress response/antifungal	148	242	IPR002902	-
	Lal3g0491	647	Pfam	Salt stress response/antifungal	38	132	IPR002902	-
	Lal3g0491	647	Gene3D	-	144	245	IPR038408	-
	Lal3g0491	647	Gene3D	-	31	135	IPR038408	-
	Lal3g0491	647	PANTHER	CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN	22	644	-	-
	Lal3g0491	647	ProSiteProfiles	Protein kinase domain profile.	328	615	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lal3g0491	647	SUPERFAMILY	Protein kinase-like (PK-like)	313	625	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal3g0491	Lal-Chr3	3471356	3477052	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal3g0491	6	647	Receptor kinase-like Gene Family	AT1G70520	35.976	1.57e-128	392

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Lal3g0491		PK_Tyr_Ser-Thr	2.4e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal3g0491	-		-	gmx:100813585	1011.13