Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0488 ATGGCGGCTGTTGAAGAATCCGTTCCTTCCAGTGAGGTCGTTGGTCTAGTTTCTGATGTCAAGCTCTTCAATCGTTGGAATTACAGTGAAATCAATAATCAGATTTCTGATGGGTCTTTGGTAGATTACATTGGTGTGTCTCCTACCAAGCATGCAATCTATGTCCCCCACACAGCCGGAAGGTATTCAGCCAAGCGTTTCAGGAAGGCGCAGTGTCCAATTATAGAGAGGCTTACCAACTCTCTTATGATGCATGGACGCAACAACGGGAAAAAGTTGTTGGCAGTAAGGATTATAAAGCATGCAATGGAAATTATCCACTTGCTCACTGACCAAAATCCGATCCAAGTTATTGTTGATGCTGTTGTCAACAGTGGACCAAGGGAAGATGCTACAAGAATTGGATCTGCTGGTGTTGTTAGACGTCAGGCTGTGGATATTTCTCCATTGCGACGTGTGAATCAGGCTCTCTACCTCCTTACTACAGGTGCACGTGAGGCTGCATTCAGAAACATTAAGACTATTGCAGAATGCTTGGCTGATGAACTTATCAATGCTGCTAAGGGGTCATCAAACAGCTATGCTATTAAGAAGAAGGATGAGATCGAGAGAGTTGCCAAGGCCAACCGTTGA 633 0.4471 MAAVEESVPSSEVVGLVSDVKLFNRWNYSEINNQISDGSLVDYIGVSPTKHAIYVPHTAGRYSAKRFRKAQCPIIERLTNSLMMHGRNNGKKLLAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQALYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0488 210 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 2 210 IPR000235 GO:0006412
Lal3g0488 210 CDD uS7_Eukaryote 21 210 IPR005716 GO:0003735|GO:0006412|GO:0015935
Lal3g0488 210 SUPERFAMILY Ribosomal protein S7 22 210 IPR036823 -
Lal3g0488 210 PANTHER RIBOSOMAL PROTEIN S7 10 210 IPR000235 GO:0006412
Lal3g0488 210 PANTHER 40S RIBOSOMAL PROTEIN S5 10 210 - -
Lal3g0488 210 TIGRFAM uS7_euk_arch: ribosomal protein uS7 20 210 IPR005716 GO:0003735|GO:0006412|GO:0015935
Lal3g0488 210 Pfam Ribosomal protein S7p/S5e 68 210 IPR023798 -
Lal3g0488 210 Gene3D Ribosomal protein S7 domain 3 210 IPR036823 -
Lal3g0488 210 ProSitePatterns Ribosomal protein S7 signature. 76 102 IPR020606 GO:0003723|GO:0003735|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0488 Lal-Chr3 3450481 3452659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0488 16 210 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 85.641 7.67e-128 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0488 K02989 - csv:116401690 346.28