Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0484 ATGACAGATACTCAGAGAATTCATCCATCTTATGATGTAGAAGCACCTACACATAGAGATTCATCTCCTTTAGTGCCAGAAAACACTGTTAAATCTGATAATGGTGATCCTATACAGAATGGTAATTATCATCATCCACCAACTCCTCCTCAAAGAACCATTCCTGTGATGCATTCAAAGCCACCAAAGAAAAAAAGAAGCTGTTGCTGTAAGTTCTTCTGTTGGATCTTCAGCATATTATTGATTCTGATAATAGCTATAGCCATCACAGTTGGAATACTATACCTTGTGTTTAGGCCAAAACTTCCAAAATATTCAGTTGATGAACTAAGCATAAGCCAGTTTGATGCTTCTGGAAATAACAGTCTTTCTGTTACTCTTAATGTTACAATAACTGCTAGGAATCCAAACAAAAAGATTGGAATATATTATGTTGGTGGTAGCCATATAAGTGCTTTGTATGATGATAGACAATTATGTGAAGGGTCATTGCCAAAATTCTATCAGGGTCATAGAAACACAACAGTGCTTAATCTTCCTATGACAGGCCAAACACAAGACACAAGTGGTCTTGTAAATACATTGGAGCAACAGAAACAACAAACTGGTAATATACCACTCATTCTTAATGTCAAACAACCTGTGAGGATTAAACTTGGGAAGTTGAAGCTTTTCAAAATCAACTTTAAGGTTAAGTGTAATCTTGTGGTGGATAATCTAAGTGCTAATAGTGATGTTAAAATTACTAGCAATAGTTGTAAGTTCAAGCTTAGGCTATGA 780 0.3538 MTDTQRIHPSYDVEAPTHRDSSPLVPENTVKSDNGDPIQNGNYHHPPTPPQRTIPVMHSKPPKKKRSCCCKFFCWIFSILLILIIAIAITVGILYLVFRPKLPKYSVDELSISQFDASGNNSLSVTLNVTITARNPNKKIGIYYVGGSHISALYDDRQLCEGSLPKFYQGHRNTTVLNLPMTGQTQDTSGLVNTLEQQKQQTGNIPLILNVKQPVRIKLGKLKLFKINFKVKCNLVVDNLSANSDVKITSNSCKFKLRL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0484 259 PANTHER EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN, PUTATIVE-RELATED 20 256 - -
Lal3g0484 259 MobiDBLite consensus disorder prediction 1 59 - -
Lal3g0484 259 Gene3D - 96 244 - -
Lal3g0484 259 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 20 256 - -
Lal3g0484 259 Pfam Late embryogenesis abundant protein 130 233 IPR004864 -
Lal3g0484 259 MobiDBLite consensus disorder prediction 22 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0484 Lal-Chr3 3432190 3432969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0484 49 259 EF-hand Containing Proteins AT5G21130 27.014 4.70e-28 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0484 - - egr:104449776 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1242 5 15156890 15157642 Lal3g0484 3 3432190 3432969 LSH
Lal3g0484 3 3432190 3432969 Lal18g0368 18 3135445 3139477 LSH
Lal3g0484 3 3432190 3432969 Lal22g0309 22 1948701 1949447 PCT
Lal22g0309 22 1948701 1949447 Lal3g0484 3 3432190 3432969 PCT