Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0480 ATGACTCTGCAGTTCTCTTCTCTTCCTACTCTCACCACCATGGAGACTATGCCTTCAGTTCTCAAGAAATATTTTGGGTTTTCAGATTATCGGCCTTATCAGAAAGATGTTATTGAGAAGATTATTGAGAAAAGGGATTGTTTGGTAGTCATGGCTACTGGTAGTGGAAAGTCCTTGTGCTACCAGGTACCTCCTTTGGTTGTTAAGAAAACTGGAATAGTTGTTAGCCCTTTGATATCATTGATGCAAGACCAGGTAATGGCTTTGAAACAGAGGGGTGTCAGAGCTGAATATATTGGAAGCACTCAGATGGATAACACTATTCAGACCAGAGCTGAGCATGGTCAATTTGACATTCTGTTCATGACTCCTGAGAAGGCATGTACAATTTCTTCCAGTTTCTGGTCCAACTTGCTAAAGGAAGGAATTAGTCTTCTTGCTGTTGATGAAGCACATTGCATATCAGAATGGGGGCATGATTTTAGGGTGGACTACAAGCAATTGGACAAGTTACGTGTTTTTCTGCCAGATGTTCCTTTTGTTGGTCTAACTGCGACTGCTACCGAAAAGGTTCGGTTTGACATCATCACTTCTCTGAAGATGAACAACCCTTATGTTTCAGTTGGTTCATTTGATCGCGCAAATCTTTTCTATGGTGTCAAACTATTTAACCGTGGACAATCTTTTGTTGATGAGCTTGTGCAAGATATTTCAAAAGAACTTTCTAGTGGTGGTTCAACTATAATTTACTGCATAACAATCAAAGATGTAGAGCAGATATTCAAGTCACTAGCTGAAGCAGGTATTGAGGCCGGAATGTACCATGGCCAAATGAATAAAAAAACTCGAGAGGAGTCTCACAGATTATTTGTTAGAGACGAATTGCAAATCATGGTGGCTACTATTGCTTTTGGCATGGGCATAGATAAGCCTAATGTAAGACAAGTGATTCACTATGGTTGCCCCAAGAGTCTAGAGTCCTACTACCAAGAAAGTGGGCGATGTGGTAGAGATGGTATAGCTTCTGCTTGTTGGCTTTACTACACAAGAAGGGACTTTAACCTGGGCGAATTTTACTGTCAAGATTTAAAATCAGAAAACCAGAAAAAAGCTGTTATGGAGTCATTGAGGGCTGCTGAACGATATTGTGTACTGACAACATGCAGAAGAAAGTTTTTGCTTGAATACTTTGGGGAAAAATTCTCAGCTGATAGATGTGGAAACTGTGATAACTGCACAGTCTCAAAGAAGGAACGTGACATGTCAAGAGAAGCATTTCTTCTAATGGCTTGCATTCATTCATGCCATGGAAAATGGGGCCTTAACATGCCCATTGACATCCTGCGTGGGTCTCGAGCCAAGAAAATTGTCGAGGCTCAGTTTGACAAGCTTCCACTTCACGGACTAGGGAAAACATACCCATCAACTTGGTGGAGAGCACTTGGACATCAACTGATTTCTCATGGTTATTTGAAGGAGACTGTTGTTGATTTTTACAGATTTATAAGTGTCGATGCAAAGGGAGAAACTTTTTTGGCCTCTTCTACACCAGATTATCAACCTCGCTTAGTTTTGTCATTGACTGCTGAAATGCTTGGAGAAGAAGAAAATGGAAGCACACAAGAAGAATTCAAAACTCTAGCCACTTCAGAATCAGAGGGTTTTTCAGAGGCTGAGAGACAGCTCTACCAAAGGCTTTTAGAAGAAAGATTAAAGCTTGCAAGAAGTGTTGGAACAGCTCCATATGCCATATGCGGCGATCAAACAATCCGGAAAATTACTTTGGCAAGACCGTCTACAAAAGCAAGGCTAGCAAACATTGATGGCGTGAATCAGCACCTAGTAACAAAATATGGCGATCAATTTCTTCAAGTTACTCGGAAACTGTCACAAGAACTAAACCTATCATTGGATGGGGAAGCAACTGTGCATACCAATGAAGTAAGGAAAGTATCTCTAGTAACAAACCAATCAAAGAAGTTGCCACCAGCAAAGCTTGAAGCATGGAGAATGTGGCATGAAGATGGTCTTTCTATTCAGATGATTGCTAACTTTCCGGGTAGATCAGCTCCTATAAAAGAACAAACTGTTGCTGAATATCTGCTGGAAGCTGCCGTAGATGGATTACCTTTTGATTGGACTAGATTCTCTGAGATGATAGGACTAACAAAAGAAATCATATTACAAATTCAGGGTGCTATTTCAAAGGTTGGATCTACAGATAAGCTAAAGCCTATAAAAAATGAATTACCAGAAGATATAAATTATCAGCACATCAAGACTTATTTGGCAATGCTAAATTGCGGAGTATCCGCAGAAGCCATTCAACCTGGAAGCCACTCTGCTGGGAAAGATGATGAACTTGTAAATAATGAAGCTTCCATTTCTTCCAAGAATCTGATTGAAAAATGTGACTTAACAATAGATGAAATACCTTCTGGAGCTGTCAATGGTGGTTGCCAGTTACGGAAGCTTCCATTCACCTGTGAGGGGGAACTCACGGGCAAGCGCCAAAAAGTCATCGAGGCAAAGGATGTAAAATCAATTCAATTGAAGGCTTCAGAAAGTTCTATAGTAGAGTGGCTGAAGAACCTTGATGAAGGGGCTACTTTGATTGATGTTTTGAAGCACTTCAAAGGATCAAATGAAGATTCTGTGGTTGAGTTGCTGAATTTTCTTGAGGGTGACTTTTCTATATATAAGAAAGGTAGCTTGTATAGGGTTATGTGA 2730 0.4033 MTLQFSSLPTLTTMETMPSVLKKYFGFSDYRPYQKDVIEKIIEKRDCLVVMATGSGKSLCYQVPPLVVKKTGIVVSPLISLMQDQVMALKQRGVRAEYIGSTQMDNTIQTRAEHGQFDILFMTPEKACTISSSFWSNLLKEGISLLAVDEAHCISEWGHDFRVDYKQLDKLRVFLPDVPFVGLTATATEKVRFDIITSLKMNNPYVSVGSFDRANLFYGVKLFNRGQSFVDELVQDISKELSSGGSTIIYCITIKDVEQIFKSLAEAGIEAGMYHGQMNKKTREESHRLFVRDELQIMVATIAFGMGIDKPNVRQVIHYGCPKSLESYYQESGRCGRDGIASACWLYYTRRDFNLGEFYCQDLKSENQKKAVMESLRAAERYCVLTTCRRKFLLEYFGEKFSADRCGNCDNCTVSKKERDMSREAFLLMACIHSCHGKWGLNMPIDILRGSRAKKIVEAQFDKLPLHGLGKTYPSTWWRALGHQLISHGYLKETVVDFYRFISVDAKGETFLASSTPDYQPRLVLSLTAEMLGEEENGSTQEEFKTLATSESEGFSEAERQLYQRLLEERLKLARSVGTAPYAICGDQTIRKITLARPSTKARLANIDGVNQHLVTKYGDQFLQVTRKLSQELNLSLDGEATVHTNEVRKVSLVTNQSKKLPPAKLEAWRMWHEDGLSIQMIANFPGRSAPIKEQTVAEYLLEAAVDGLPFDWTRFSEMIGLTKEIILQIQGAISKVGSTDKLKPIKNELPEDINYQHIKTYLAMLNCGVSAEAIQPGSHSAGKDDELVNNEASISSKNLIEKCDLTIDEIPSGAVNGGCQLRKLPFTCEGELTGKRQKVIEAKDVKSIQLKASESSIVEWLKNLDEGATLIDVLKHFKGSNEDSVVELLNFLEGDFSIYKKGSLYRVM 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0480 909 Pfam DEAD/DEAH box helicase 32 191 IPR011545 GO:0003676|GO:0005524
Lal3g0480 909 Pfam Helix-turn-helix domain 666 763 IPR029491 -
Lal3g0480 909 Gene3D - 415 539 IPR036388 -
Lal3g0480 909 ProSiteProfiles HRDC domain profile. 556 636 IPR002121 GO:0003676
Lal3g0480 909 Pfam RQC domain 417 513 IPR018982 GO:0006260|GO:0006281|GO:0043138
Lal3g0480 909 SUPERFAMILY "Winged helix" DNA-binding domain 411 519 IPR036390 -
Lal3g0480 909 Pfam RecQ zinc-binding 362 413 IPR032284 -
Lal3g0480 909 PANTHER DNA HELICASE RECQ FAMILY MEMBER 14 688 - -
Lal3g0480 909 Gene3D HRDC domain 554 637 IPR044876 -
Lal3g0480 909 Gene3D - 9 211 IPR027417 -
Lal3g0480 909 SMART ultradead3 26 223 IPR014001 -
Lal3g0480 909 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 19 471 IPR004589 GO:0004386|GO:0006310
Lal3g0480 909 SMART hrdc7 556 636 IPR002121 GO:0003676
Lal3g0480 909 SMART helicmild6 258 339 IPR001650 -
Lal3g0480 909 Pfam Helicase conserved C-terminal domain 237 338 IPR001650 -
Lal3g0480 909 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 354 IPR027417 -
Lal3g0480 909 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 229 380 IPR001650 -
Lal3g0480 909 CDD DEXHc_RecQ 19 212 - -
Lal3g0480 909 PANTHER WERNER SYNDROME ATP-DEPENDENT HELICASE 14 688 - -
Lal3g0480 909 Gene3D - 213 414 IPR027417 -
Lal3g0480 909 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 38 205 IPR014001 -
Lal3g0480 909 CDD SF2_C_RecQ 213 348 - -
Lal3g0480 909 SUPERFAMILY HRDC-like 554 635 IPR010997 GO:0000166|GO:0044237
Lal3g0480 909 SMART RQC_2 420 524 IPR018982 GO:0006260|GO:0006281|GO:0043138
Lal3g0480 909 Pfam HRDC domain 560 625 IPR002121 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0480 Lal-Chr3 3399411 3411282 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0480 25 341 Eukaryotic Initiation Factors Gene Family AT3G19760 23.881 8.39e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0480 K03654 - gmx:100797777 1450.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0480 3 3399411 3411282 Lal3g0480 3 3399411 3411282 ECH