Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0463 ATGGGTTCGGACACTTGCGTGAATGCTCCGTGTGTGCACGATTGGAAGATGGGGTGGCCTCTGCGATCTGGTGGATTCGCCCAACTATGCATCAAATGCGGATTCATGGAGGAATGGAAGCATGGCATCCTTGATCCATTATCTGTTTATGATATGTCAGTTTTTTGCAATAAATTCCATCGTCAAAAAACTGGGTGGGTGGAGTGTAAATTTTGCAACAAGCCTATCCACTGTGGATGCATAATATCTAGATCTTTATTCGAGTACCTTGACTTCGATGGCATAGGTTGTGTTAGCTGTGTAGCTTCCCAACTTCGTATGACGAGGAATACTGAAAATCCTAATGGGTCTATTTCATCAACTAAAAATAATGCAAGTGATCGGCATTCTACTCATACCGATGGAACACTGTTTGTGGATAATAGTGATGAAGGAAAACTTATGCAATTGTGCAGAATTGTTGAAGCTAGTGAATCTAGCCTTTGGAATAATGCTAGGAGAGATAGCGTGATGTCATGCAGTGGACAAAACAATCAAGAAGTGAAGTGCTCATTGGAAGAAGGGGATACTGGATTTTCAAATGTGATTAAACCATTGGTTCAGTCACTAGCATTTTCCAAGTTAGAAAATAATAGATCAACACGAGAGATTAAAAATATACATGAACCAACTGCACAGCCATCTTTGAATATGTATCTGGGAAATCCGTCAGGGAACAACACTATTCTGCCTTCTTCTTCTTCTGGAGAGATCCTAGAAGCAAGACTTGAGGGAAAAGCATTTCCTCCCTTTAACCAAGGGCAAAGATCTCGCCCTATATGGCCCAAACCATTGAAGACTGGGATATCCATGAATCTGGAACCAGATAAAGGAGCACTTTCTCATGCACGGATTGCTCGACCACCTGCTGATGGTAGGGGCAAGAGCCAGTTACTTCCTCGATACTGGCCAAGGATCACTGATCAAGAGCTGGAGCGATTGTCTGGAGATTTGAAATCCACTGTAGTGCCTTTATTTGAGAAGGTGTTGAGTGCCAGTGATGCCGGTCGAATTGGTCGTCTTGTTCTCCCAAAAGCCTGTGCTGAGGCTTATTTCCCTCCTATTTCGAATTCTGAAGGTCTTTCTTTGCGGGTCCAAGATGTGAAGGGGAATGAGTGGACATTTCAGTTCAGATTTTGGCCTAATAACAATAGTAGGATGTATGTATTGGAGGGTGTGACCCCTTGCATACAGGCCATGCAATTATGTGCTGGTGATACTGTAACATTTAGTCGGATAGATCCCGGGGGAAAACTTGTTATGGGTTTCAGAAAGGCATCAAATTCCATAGATACACAGGATGCTTCTACTTCTGCCCATTCTAATGGCATATCAACGAAGGGAACAACCAATTCTGGTGGAACCGAGAATCTGCCACCGGGTAGCAGTTTTGCTGATCTTCTCCAGATGATAAAAGGGAACGGGGAACCTCACTTAAATGGACATCTGGAACATCTTCATTTGGGTGCTGGAGCTGCGGGTTTGCTTAAAGCAGAAAATTGCGAGAAAACAAACAATCATTCACCACAGCAACCAATTCCAGTTTCGGAGAAGAGGACTCGCAATATTGGGCCTAAAAGCAAGAGGTTTTGCATTGATAAAGAAGATGCTATGGAGTTGAGACTTACATGGGAAGAAGCACAGGACTTGCTTCGTCCGCCCCCAAGTGTCCAGCCAAGTATTGTCACAATTGAGGACCAAGTAATTGAAGAATATGAGGAACCACCGGTTTTTGGAAAGAGAACTATATTCTGTGCCTGTCCATCTGGGGGGAAAGAACAATGGGCTCAATGTGATGATTGCTCTAAATGGCGAAGGCTTCCAGTCGAAATTCTTCTTCCTCCTAAGTGGACATGTTTTGAAAACGTTTGGGATGCAAGCAGGTGTTCATGTTCCATGCCAGAGGAGAAGAGTTCACGGCAATTCGAAAATCTTCTGAAACCCAGCAAAGATTTTAAGAAGCGAAAAACTCTAGCAAATGGTAAGTCAATCAAAGAGCGCGAGCCTTGTGGATTAGATGCTCTTGCCAGTGCAGCAGTTTTAGGAGAAAATCTTATGGACCCTGCCGAGTCATCAGCTGGAGCCACCACAAAACATCCTAGACACCGTCCCGGTTGCTCTTGTATTGTGTGCATTCAGCCCCCTAGTGGAAAGGGGAGACATAAGCCAACCTGTACTTGCAATGTGTGCATGACCGTGAAGCGCCGGTTCAAAACCCTTATGCTACGCAAGAAGAAACGCCAATCGGAACGTGAAGCAGATGCTGCTGCTAAAGAAGATAACAATCACCAGAGAGATGGGTCAAATGCCAATGGAGCATCAAAAGATGATACAAGCCATTTGGAGAAAGAGAGAGGACTTAAAGATCAACCCGAGGCGGGCGAGTCCAGTGCTGGACGAATAGACTTAAATTCTCACCCCAACCGCGAAGATATACAAATGGATATAACAGGACTTAGCATGTCTATTAATAATCTTGAAATTACAAACCATCAAGCAAGGGAAGAATATATGAATATGAATGGCCTAAAAAACAGTGATGTGCAGGCTAGTCAACATTCTTCATTACTCACTCAATCTAATGGAGAAGGTTAG 2634 0.4377 MGSDTCVNAPCVHDWKMGWPLRSGGFAQLCIKCGFMEEWKHGILDPLSVYDMSVFCNKFHRQKTGWVECKFCNKPIHCGCIISRSLFEYLDFDGIGCVSCVASQLRMTRNTENPNGSISSTKNNASDRHSTHTDGTLFVDNSDEGKLMQLCRIVEASESSLWNNARRDSVMSCSGQNNQEVKCSLEEGDTGFSNVIKPLVQSLAFSKLENNRSTREIKNIHEPTAQPSLNMYLGNPSGNNTILPSSSSGEILEARLEGKAFPPFNQGQRSRPIWPKPLKTGISMNLEPDKGALSHARIARPPADGRGKSQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISNSEGLSLRVQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMQLCAGDTVTFSRIDPGGKLVMGFRKASNSIDTQDASTSAHSNGISTKGTTNSGGTENLPPGSSFADLLQMIKGNGEPHLNGHLEHLHLGAGAAGLLKAENCEKTNNHSPQQPIPVSEKRTRNIGPKSKRFCIDKEDAMELRLTWEEAQDLLRPPPSVQPSIVTIEDQVIEEYEEPPVFGKRTIFCACPSGGKEQWAQCDDCSKWRRLPVEILLPPKWTCFENVWDASRCSCSMPEEKSSRQFENLLKPSKDFKKRKTLANGKSIKEREPCGLDALASAAVLGENLMDPAESSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCMTVKRRFKTLMLRKKKRQSEREADAAAKEDNNHQRDGSNANGASKDDTSHLEKERGLKDQPEAGESSAGRIDLNSHPNREDIQMDITGLSMSINNLEITNHQAREEYMNMNGLKNSDVQASQHSSLLTQSNGEG 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0463 877 MobiDBLite consensus disorder prediction 443 472 - -
Lal3g0463 877 MobiDBLite consensus disorder prediction 443 477 - -
Lal3g0463 877 Gene3D - 317 444 IPR015300 -
Lal3g0463 877 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 862 - -
Lal3g0463 877 MobiDBLite consensus disorder prediction 789 804 - -
Lal3g0463 877 MobiDBLite consensus disorder prediction 854 877 - -
Lal3g0463 877 MobiDBLite consensus disorder prediction 758 778 - -
Lal3g0463 877 ProSiteProfiles Zinc finger CW-type profile. 602 652 IPR011124 GO:0008270
Lal3g0463 877 SMART B3_2 339 440 IPR003340 GO:0003677
Lal3g0463 877 Coils Coil 836 856 - -
Lal3g0463 877 Pfam B3 DNA binding domain 339 438 IPR003340 GO:0003677
Lal3g0463 877 Pfam CW-type Zinc Finger 607 650 IPR011124 GO:0008270
Lal3g0463 877 MobiDBLite consensus disorder prediction 855 877 - -
Lal3g0463 877 MobiDBLite consensus disorder prediction 111 138 - -
Lal3g0463 877 CDD B3_DNA 337 438 IPR003340 GO:0003677
Lal3g0463 877 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 862 - -
Lal3g0463 877 Gene3D - 601 652 - -
Lal3g0463 877 SUPERFAMILY DNA-binding pseudobarrel domain 337 441 IPR015300 -
Lal3g0463 877 MobiDBLite consensus disorder prediction 754 822 - -
Lal3g0463 877 ProSiteProfiles B3 DNA-binding domain profile. 339 440 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0463 Lal-Chr3 3173838 3181383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0463 1 826 B3 DNA Binding Superfamily AT2G30470 47.909 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal3g0463 B3 1.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0463 - - lang:109337935 1455.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0463 3 3173838 3181383 Lal3g0463 3 3173838 3181383 ECH
Lal5g1264 5 15366268 15375048 Lal3g0463 3 3173838 3181383 LSH
Lal3g0463 3 3173838 3181383 Lal11g0574 11 4619315 4627443 LSH
Lal3g0463 3 3173838 3181383 Lal22g0318 22 2017991 2024359 PCT
Lal3g0463 3 3173838 3181383 Lal6g0350 6 2213676 2220066 PCT
Lal22g0318 22 2017991 2024359 Lal3g0463 3 3173838 3181383 PCT
Lal6g0350 6 2213676 2220066 Lal3g0463 3 3173838 3181383 PCT