Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0453 ATGGCACGTAGAGTAAACTTCATTGAAGAGATTAATGCGACCAAGGATACTTGGAAGATTAAAGTCAGGATTGTTGGTCTTTGGCGTGTGGACAGATCATCGGCGCCATCCTTGGAAATGATATTCATGGACGAAAATGGTGACAAGATAGAAGCTGTGGTCAAGAATTACCATATTTCTCTATGGGAGACTAAAATCCAGGAGGGCCAGAGTTATGTTGGTGAGAATTTTGACGTGAAGGGGACAATAATGACTAACAAACAATTGTCAGATATTCCTCTTTATATTTATCAATTCACTGCATTTGAGGACATCCTCAGTGGAGTTGCTACCACAAATGTTTTAATTGATGTCATTGGAGAGTTCATTGACATAGAGATGAGCCAACCTGAATCAATGCCGAAGAAGGTCGTCTTCGGCATGCGAGACCAAAGAGGGAATAACATTAGTTGTACATTGTGGGGTCAATTTGCATCGCAACTCCTGAAATATGAACGCGACCACAAGTTTGGTCCAATAGTGGTCATACTCACCCTTGCAAAGATTCGAGAAGCGAAAGGAGGTTATCCTATAACCATTCAAAATACAATGTATGGTTCAAAGCTTTTTATAAATGACAACATTCAGGAAATTCAAGTTTTCACTAAAAGCTTGGGCTCTGGAAAACCATATGAGTCATACAATCAACGCATGAGTAATACATCTTCATCCTCTATGGGGGGGTCTCAAGACAAGTTCTTCCAAAATGCAGTTGTCAAAACAATATCTGAATTGATCCAACTTGATCACGAATCTGTTTGTGTCACTTATGGCACAATTGAGAAGTTATTTGCTAATGGATGGTACTATGATGGATGCCCCCAATGCAATAGAAAAGCTGATGCAATTAGGATTCCATTTAATTGTCCTGGTTGTGGAAAGTTTTTGAAGGAAGTTGTGCCGAGATATAGAGTAGAGATCAGGGCTAATTACAACCATGACAACATGAAATTTGTTTTATGGAACCGTGAATGTGAACAGTTGATCAAACAACCAGCTGTTGACTTGAAGGAGTTGATGTTAGCGGACGGGGAATTGAATCCAATGTCCATTCCCCAAGTTGTTGATGACCTTGTGACCAAATCATTGGCCTTCAAGGTCAAAGTCCATCCTACATACAAGCGTTGCTCTGTTATCCAAGTCTCGGAGGACTCCCAACTCATTGAATCGTTATTGGACAGAATTGCACCACATATAGTCACAAGGACGGTTGAGAAGGGGAAGACTGTTGGTGGAATGCTCAAGGAAGATGAACAATTTGAATGTCAATCATTGTCAGCCACCGCTGATTATGATCCAGAAAATATGGCATACCTCACTCCCAAAAAGAGGCTTGCCTCTACTGCCCTCTTAGATGAACAAGATCTTGCATTAGCACAAATGTCATCAACCAAGAATGCCAAGCACATTGAGACTGAATAA 1461 0.4066 MARRVNFIEEINATKDTWKIKVRIVGLWRVDRSSAPSLEMIFMDENGDKIEAVVKNYHISLWETKIQEGQSYVGENFDVKGTIMTNKQLSDIPLYIYQFTAFEDILSGVATTNVLIDVIGEFIDIEMSQPESMPKKVVFGMRDQRGNNISCTLWGQFASQLLKYERDHKFGPIVVILTLAKIREAKGGYPITIQNTMYGSKLFINDNIQEIQVFTKSLGSGKPYESYNQRMSNTSSSSMGGSQDKFFQNAVVKTISELIQLDHESVCVTYGTIEKLFANGWYYDGCPQCNRKADAIRIPFNCPGCGKFLKEVVPRYRVEIRANYNHDNMKFVLWNRECEQLIKQPAVDLKELMLADGELNPMSIPQVVDDLVTKSLAFKVKVHPTYKRCSVIQVSEDSQLIESLLDRIAPHIVTRTVEKGKTVGGMLKEDEQFECQSLSATADYDPENMAYLTPKKRLASTALLDEQDLALAQMSSTKNAKHIETE 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0453 486 SUPERFAMILY Nucleic acid-binding proteins 252 383 IPR012340 -
Lal3g0453 486 CDD RPA1_DBD_B_like 117 218 - -
Lal3g0453 486 CDD RPA1_DBD_C 252 382 IPR013955 -
Lal3g0453 486 SUPERFAMILY Nucleic acid-binding proteins 7 80 IPR012340 -
Lal3g0453 486 Gene3D - 3 99 IPR012340 -
Lal3g0453 486 SUPERFAMILY Nucleic acid-binding proteins 97 224 IPR012340 -
Lal3g0453 486 Pfam Replication factor-A C terminal domain 269 383 IPR013955 -
Lal3g0453 486 Gene3D - 100 222 IPR012340 -
Lal3g0453 486 PANTHER REPLICATION FACTOR A 1, RFA1 22 344 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lal3g0453 486 Gene3D - 233 409 IPR012340 -
Lal3g0453 486 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0453 Lal-Chr3 3125440 3127829 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0453 4 349 Core DNA Replication Machinery Family AT2G06510 22.222 1.57e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0453 - - lang:109325982 479.559