Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0440 ATGGACCCCAACATTTCCCGTTGGGTCCTGGAATTCCTCCTCCGTAGTTCCGTTCCCGATTCTCTCATCGCCAAAACCCTCACCGCCCTTCCTATCTCCGGCGTTGACTCCCGCCTCAAGAAAACCCTCCTCCTCCGCACCCTCCGCACACTCCACTCCAATGCCTCAATCACTGAAACCGCTCTCGAAATCCTCGAACTCATCGAAGATATCGACTATAACGACGCCGTTCCGGTCACCGATTCGATGCGCCGCGCCTTCTGCGCCGTTGCGGTCGAGTGCACTGTCAAGTACCTCGCTGCGTGCCCCGATGATGCTGCGGGGAATTACTTCGCTGCCGTGAGGAGGATATGGCGCGGGAGAGTGACGAGGATGGAGAGTGCCGGTCGACGGAGTAGGTTGTTCTCTGAGGAGTTGGCGCGGTGGAGGGATGATTTGGAGGCCGCGGTTTGGGATACTAGGGTTTGTGAGAGACTGGTGCAGTTGAATAGTAGGACCGAGGCTTTTAATGAGGTGAAAGTGTATTTGAAGGAAGCGTGGGAGGGTATGGGCCCGTCGTTTCTTAATTCCGTGGAGGCAAAGACGAAGGGTTTTGGCTTTGATTTTGGTGAAGAATCGGTTAGGAACCGTGGTGGAGGGTTAGAGTTTTCGGGCAATGTTGATGGCAATGATAATGATAATCATGTTAATGATGCTGATGTTAATCATGTTAATGATGCTGATGATAATCATGTTAATGATGCTGATGATAATCATGTTAATGATGCTGATGTTAATCATGTTAATGATGCTGATGATAATCATGTTAATGATGCTGATGATAATCATGTTAATGATGCTGATGATAATCATAATAATGTTGCTGATGATGATAGTGATAGTGATAATGATAATGATAATCATAATAATAATGATGGTCGTGATGCATGCTGTGTGGAGAATGAAAATCATGGCAATGAAAATGAATTGGAACAAAGAGTTGGGGCTTCGATTGATTTTAACCATCAATTGCTTGCAGAAAAAGAGAAAGAAATTCAGAAAGGCAATGTTCAACCTGCACAAAATCACCTTGAACTACATACATACCTTGGCAGTATTGGTGAATTTGCTTATGGTGGTGAGCTGAAGAGGAAGCATGATGAGGGATTAGAAGGTTTGACAAAGCAGAGAAGGGACTTTGCTGGTGGTGATAGGAGTGAACCAGATGATGGTGGTGTGTGCTGCATGGAGGATGTGCCAGTGTCTGGTGAAAAGCAGCTTAAGGAACAGGTGGAAGAGAGATTTGGGGTTTCTGTTTATGGGAATCAGGAATTGGTGTGTGACTTGCCTGCACATGGAAAGAAAGAAATTCAGAAGGGCAATCTTCAGCATAGATTCAAGCACACTGTACTACATAGATGCCATAAGGGAGTTAAACTCTCTGGTATCGAGGAAGTGGAACCAGCAAAATCATGGAGCAAATGTGATGCTGTGCCTAGTGCTGAAGTTAAAAAAGTTCGGGAATCCCTTAAATCAAGTTCTTTGGAGCTGCAAGCATTGGTTAAGGATCCTCTTCCTGATGCATTGCAATTGTCAGAAGTTGTAAGATCCAATTTGGCAGGGAAAGACATTAATCACAGACTGAGTATTGGAAACCAGAATGGAGATGTAGATGTACCAGATCCAAATGTTGATCAGAATGGAGATGTACCAGATCCAAGTGTTGACCAGAATGGAGATGTACCAGATCCAAATGTTGACCAGAATGGAGATGTACCAGATCCAAATGTTTGCAACAGTATTGTACCTTTTCAACCAAATGATGCTATTCTTGTGAAGAAGCCTTTTGTTCGTTGTAGTAATAATGTCCGTTGCCCCAACTTAATGGAACGGAAAGTTACAGCTCGTACTTATGAGTGGGATGATTCTTTAGATAACTCGCCACAACAGGCACAGCCAAGAAAGAGGAAAAGGAAATGGACTTCATTGGAAGAGGAGACACTAAGGGATGGTGTAAACAAGTTTGGAGAAGGAAACTGGGCAGCAATCCGAGGTTTTTATAGTGACATATTTGAAAACAGAACTGGAGTTGATCTGAAGGACAAGTGGAGAAATATGATGCGAAACATATCATCAATGCAGCATGGTGAAAAAAACTATACTAGGAAAAGGCTTGAAGAAAACTATGCAGCATTGAAACTATTTTGTTCTTTCCTTGCCTCTCTCCTCCCTGGTTCATACTTCACACCCAATCAGTTGGAGGCTAAAATGTCTAAACGTGAAGTTTGGCACGTGAGCTTCAACCCAGTTTTCATCTTCCTTAAACTTCCATTGATGGAGATGCTTGAAAAGCCAGTATCCTAA 2343 0.4388 MDPNISRWVLEFLLRSSVPDSLIAKTLTALPISGVDSRLKKTLLLRTLRTLHSNASITETALEILELIEDIDYNDAVPVTDSMRRAFCAVAVECTVKYLAACPDDAAGNYFAAVRRIWRGRVTRMESAGRRSRLFSEELARWRDDLEAAVWDTRVCERLVQLNSRTEAFNEVKVYLKEAWEGMGPSFLNSVEAKTKGFGFDFGEESVRNRGGGLEFSGNVDGNDNDNHVNDADVNHVNDADDNHVNDADDNHVNDADVNHVNDADDNHVNDADDNHVNDADDNHNNVADDDSDSDNDNDNHNNNDGRDACCVENENHGNENELEQRVGASIDFNHQLLAEKEKEIQKGNVQPAQNHLELHTYLGSIGEFAYGGELKRKHDEGLEGLTKQRRDFAGGDRSEPDDGGVCCMEDVPVSGEKQLKEQVEERFGVSVYGNQELVCDLPAHGKKEIQKGNLQHRFKHTVLHRCHKGVKLSGIEEVEPAKSWSKCDAVPSAEVKKVRESLKSSSLELQALVKDPLPDALQLSEVVRSNLAGKDINHRLSIGNQNGDVDVPDPNVDQNGDVPDPSVDQNGDVPDPNVDQNGDVPDPNVCNSIVPFQPNDAILVKKPFVRCSNNVRCPNLMERKVTARTYEWDDSLDNSPQQAQPRKRKRKWTSLEEETLRDGVNKFGEGNWAAIRGFYSDIFENRTGVDLKDKWRNMMRNISSMQHGEKNYTRKRLEENYAALKLFCSFLASLLPGSYFTPNQLEAKMSKREVWHVSFNPVFIFLKLPLMEMLEKPVS 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0440 780 PANTHER MYB TRANSCRIPTION FACTOR 1 701 - -
Lal3g0440 780 MobiDBLite consensus disorder prediction 539 585 - -
Lal3g0440 780 SUPERFAMILY Homeodomain-like 646 708 IPR009057 -
Lal3g0440 780 MobiDBLite consensus disorder prediction 386 405 - -
Lal3g0440 780 Pfam Myb-like DNA-binding domain 650 699 IPR001005 -
Lal3g0440 780 Gene3D - 653 726 - -
Lal3g0440 780 MobiDBLite consensus disorder prediction 226 313 - -
Lal3g0440 780 CDD SANT_TRF 651 701 - -
Lal3g0440 780 SMART sant 649 702 IPR001005 -
Lal3g0440 780 PANTHER MYB TRANSCRIPTION FACTOR 1 701 - -
Lal3g0440 780 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 645 704 IPR017930 -
Lal3g0440 780 MobiDBLite consensus disorder prediction 213 313 - -
Lal3g0440 780 ProSiteProfiles Myb-like domain profile. 645 700 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0440 Lal-Chr3 3053268 3058766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0440 653 700 Single Myb Histone (SMH) Gene Family AT1G15720 47.917 3.56e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lal3g0440 Myb_DNA-binding 1.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0440 - K11111 lang:109329694 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0440 3 3053268 3058766 Lal3g0440 3 3053268 3058766 ECH
Lal5g1268 5 15401284 15406707 Lal3g0440 3 3053268 3058766 LSH