Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0439 ATGGCTAGAAAAAAACTTGACCTAACATACATAGCTAGTGACTCAAAGAGAAATGCAACATACAAGAAAAGGAGAAATGGGTTGATGAAGAAGATAAATGAGATTAGTACCCTTTGTGGAATAGAGGCTTGTGCAATAATTTCTACCCCTTATGATCTTCAACCAGAAGTTTGGCCATCTCATTTAGGGGTTCAAAGGGTACTCTACAAGTTTAGTAGAATGAGTGAAATGGAAAAAAGCAAGAAAATGTTCAATCAAGAAAATTTCTTGAGCCAAAGCATCATAAAAGCTAGAGAGCAACTAAGAAAGTTGAGGAATGAGAACAGAAAGAAGGAGATGTCTCTTCTGATGTTTCAATGTTTGAGTAGTGAGAACCCTAGTAACAATGTTAACATGACTAATTTGAATGATTTTTCATGGATGGTTGATCTAACCCTGAAGGAGATTGAACAAAATATGACAAAGAACCAACCCAAAGAAGAGGGATTTGTGCCTACAAATGGAGGAGAAGCTATGAATAATGGAGAGAATAATATTAATGCACCTTTGGATTCTCATGTTCAAGGGATTATGCAGATTAATATGGATGCCATGCAGAAGCAGGATTTGGCTATGAACTCTATGAATGGTGGTGGGAATTTGATGCTTCCAACTAGAGATTTTGGTCTCTCAAATGGTATGGTTTGGAATGAACATTATCTTCATTAA 708 0.3616 MARKKLDLTYIASDSKRNATYKKRRNGLMKKINEISTLCGIEACAIISTPYDLQPEVWPSHLGVQRVLYKFSRMSEMEKSKKMFNQENFLSQSIIKAREQLRKLRNENRKKEMSLLMFQCLSSENPSNNVNMTNLNDFSWMVDLTLKEIEQNMTKNQPKEEGFVPTNGGEAMNNGENNINAPLDSHVQGIMQINMDAMQKQDLAMNSMNGGGNLMLPTRDFGLSNGMVWNEHYLH 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0439 235 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 203 - -
Lal3g0439 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal3g0439 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal3g0439 235 Gene3D - 14 95 IPR036879 GO:0003677|GO:0046983
Lal3g0439 235 SUPERFAMILY SRF-like 1 84 IPR036879 GO:0003677|GO:0046983
Lal3g0439 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal3g0439 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Lal3g0439 235 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Lal3g0439 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 203 - -
Lal3g0439 235 Coils Coil 87 114 - -
Lal3g0439 235 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0439 Lal-Chr3 3050061 3050768 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0439 1 182 Type I MADS-box Gene Family AT5G48670 47.283 1.06e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal3g0439 SRF-TF 3.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0439 - - lang:109329409 280.796