Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0438 ATGACAAGAAATAAAGTAAAACTTGCATTCATACTCAATGATTCTGCAAGGAAAGCAACATACAAGAAAAGGAAGATGGGTTTGTTGAAGAAGATAGATCAACTAAGCACCCTTTGTGGAATTGAAGCTTGTGCTATAGTTTGTAGCCCTTATGAGCATCAACCTGAGATTTGGCCATCACCAAGTGGGGTTCAAAAGGTGCTTGCAAAGTTCTGGAATATGTCTGAATTGGAGCAAAGTAAGAAGATGTTGAACCAAGAAACTTTCCTGAAACAAAGGATTCTTAAGGCTATAGAACAAGTGAAGAAACTGAAGAGAGAGAATAAGGAGAAAGAAATGACTTTGCTCATGTTTGATTGTCTTAATGCTGGTAACATTGTTACTAACGTGAATAACTTTGATTTGAATGATCTTGCATGGATTATTGACCAGAACTTGAAGGAAATTGATCGAAAGAAGGAAATATTAGGAAATTAA 477 0.3564 MTRNKVKLAFILNDSARKATYKKRKMGLLKKIDQLSTLCGIEACAIVCSPYEHQPEIWPSPSGVQKVLAKFWNMSELEQSKKMLNQETFLKQRILKAIEQVKKLKRENKEKEMTLLMFDCLNAGNIVTNVNNFDLNDLAWIIDQNLKEIDRKKEILGN 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0438 158 PANTHER MADS BOX PROTEIN 2 154 - -
Lal3g0438 158 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 154 - -
Lal3g0438 158 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Lal3g0438 158 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Lal3g0438 158 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Lal3g0438 158 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lal3g0438 158 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal3g0438 158 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lal3g0438 158 Coils Coil 87 114 - -
Lal3g0438 158 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal3g0438 158 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0438 Lal-Chr3 3046809 3047285 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0438 1 158 Type I MADS-box Gene Family AT5G48670 55.696 3.99e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal3g0438 SRF-TF 3.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0438 - - gmx:100813231 227.639