Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0437 ATTGAGAAGCTTAGAATGGCACACCAGGGATCTTCCATTATTACTCTTATGATCCTCATCATTGTTCTCCTTATGAGCATGAACCTTCAAGGTGCATTGGCTGACTATGGTGGCTGGGAGGGTGCTCATGCCACTTTCTATGGAGGGGGTGATGCTACTGGCACAATGGGAGGAGCATGTGGTTATGGTAATTTATATAGCCAAGGTTATGGAACTAACACTGCAGCTCTAAGCACTGCTTTGTTCAACAATGGCTTAAGTTGTGGGTCTTGCTATGAAATGAGATGTGATGATGACCCAAGATGGTGCAAACCTGGCTCTATTATTGTTACTGCTACAAACTTTTGTCCACCAAATCCATCTTTGCCTAACAACAATGGTGGTTGGTGCAACCCTCCACTTCAACATTTTGATATGGCTCAACCAGCATTTCTTCAAATTGCTCAATATAAGGCTGGAATTGTGCCTATTTCCTTTAGAAGATCGATATTGAAATCGATAGTCACCCCTTCCACTGGTCTGCCAAGACAGTCTCAATTAATAAAGGAGATTATCGCTTTATCTAAAGACCTGATCCCAAGAGTGGCTTGTATGAAAAAGGGAGGAATAAGATTCACAATGAATGGACACTCATACTTCAACCTGGTTTTGGTCACCAATGTGGGTGGAGCTGGTGATGTTCATTCAGTGTCCATCAAAGGGTCTAGAACTCAATGGCAAATTATGTCAAGAAACTGGGGGCAAAACTGGCAAAGCAATTCTTACCTTAATGGACAAAGCCTCTCTTTTCAAGTCACAACTAGTGATGGTATAACTGTCACAAGCTTCAATGTTGCACCACTTAATTGGCAGTTTGGTCAGACCTTCCAAGGGGCTCAGTTTTAA 885 0.4237 IEKLRMAHQGSSIITLMILIIVLLMSMNLQGALADYGGWEGAHATFYGGGDATGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMRCDDDPRWCKPGSIIVTATNFCPPNPSLPNNNGGWCNPPLQHFDMAQPAFLQIAQYKAGIVPISFRRSILKSIVTPSTGLPRQSQLIKEIIALSKDLIPRVACMKKGGIRFTMNGHSYFNLVLVTNVGGAGDVHSVSIKGSRTQWQIMSRNWGQNWQSNSYLNGQSLSFQVTTSDGITVTSFNVAPLNWQFGQTFQGAQF 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0437 294 PANTHER EXPANSIN-A15 12 162 IPR002963 GO:0009664
Lal3g0437 294 PANTHER EXPANSIN-A15 193 294 IPR002963 GO:0009664
Lal3g0437 294 SUPERFAMILY PHL pollen allergen 199 291 IPR036749 -
Lal3g0437 294 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 212 291 IPR007117 -
Lal3g0437 294 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 161 IPR007112 -
Lal3g0437 294 SMART dpbb_1 74 159 IPR007112 -
Lal3g0437 294 SUPERFAMILY Barwin-like endoglucanases 38 161 IPR036908 -
Lal3g0437 294 PANTHER EXPANSIN 12 162 - -
Lal3g0437 294 PANTHER EXPANSIN 193 294 - -
Lal3g0437 294 Gene3D - 201 294 IPR036749 -
Lal3g0437 294 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576
Lal3g0437 294 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576
Lal3g0437 294 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576
Lal3g0437 294 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Lal3g0437 294 Pfam Expansin C-terminal domain 203 280 IPR007117 -
Lal3g0437 294 PRINTS Expansin signature 69 83 IPR002963 GO:0009664
Lal3g0437 294 PRINTS Expansin signature 96 107 IPR002963 GO:0009664
Lal3g0437 294 PRINTS Expansin signature 108 118 IPR002963 GO:0009664
Lal3g0437 294 PRINTS Expansin signature 127 144 IPR002963 GO:0009664
Lal3g0437 294 PRINTS Expansin signature 144 157 IPR002963 GO:0009664
Lal3g0437 294 Pfam Lytic transglycolase 74 158 IPR009009 -
Lal3g0437 294 Gene3D - 25 162 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0437 Lal-Chr3 3033933 3036637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0437 16 294 Expansin Gene Family AT2G40610 69.286 1.83e-141 397
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0437 3 3033933 3036637 Lal3g0437 3 3033933 3036637 ECH
Lal3g0437 3 3033933 3036637 Lal17g0667 17 4719945 4721613 ECH
Lal5g1272 5 15443073 15446410 Lal3g0437 3 3033933 3036637 LSH