Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0432 ATGGAGATATCATTGTTAAAGATGCTTGTTCGTAGCATATCCTCATTTTTGCATTTATCATTTTCTGGAAAAAAGAACTCCGAACCTGTCACGAAGTATTACCAGAAGGCAGAGGAGATACTTAAGTTGGTGAAGCCAATTATTGATGTGATAATTAATTCTGATCTAGCTTCTGATGAAGTGCTTTGTAAGTTATTTGAAGAACTTGGTCATGCTGTTGATGAATTAAGGGAGCACGTTGAGAACTGGCAACTACTGTCTAGCAAGGTTTACTTTGTTATGCAAGCTGAACCCTTGATATCTAGGATTCGAACTTCAGGGCTCAATATTTTCCAGCTGCTGAAGGCTTTCCATGATTACCTCCCTGATGAATTGAGTTCTGAACATGTAGAGCACTCTGTTCAGAAACTGAAGCATTTGGGACGCGATGAAACCTCATCAGACATTAAGGAAGCTATTAAGGAACAACAAGATGGTGTAGGGCCGAGTTCAGAGGCAATGACAAAAATTGCTGATAGCCTAGGCTTAAGGTCTAATGAGGAGGTTCTGATTGAGGCTGTAGCCCTTGAAAAGTTGAAGGATAATGCTGAACAAATTGAAAATACTGCAGAATCTGAATACATTGATCAAATAATTGCTGTCATAACATGTATGCATGAGCGTCTTGTTATGCTTAAGCAAGCACTGAGTTGCAGCCCAGTTCCAGTACCTGCTGATTTTTGTTGTCCTCTATCTTTGGAGTTGATGACTGATCCAGTGATTGTGGCATCAGGGCAAACCTATGAGCGGATTTTCATCAAGAACTGGATTGATCTTGGCCTTAATGTTTGTCCAAAGACACGCCAGACTCTGTCTCATACCAACCTAATACCTAACTACACTGTAAAGGCACTAATCGCAAACTGGTGTGAATCAAACAATGTGAAGCTGGTTGATCCCTCTAAGTCCATGAATTTAAGTCAAGTATCTGTTCTTCATGGGTATTTGGAGTCTGGTACAACCAGGGAATCACCTGTTTTTGCTCATTCGAGGAGCAACCAGCCATCCTCACCTGAGTTGGCTCGTTCTCGTTCTTTTTGTTCACGAGGGAATAAGTTAACTTCTGGTGGAACCCAGCAAGAAGGGTCCTTAAATGGCATGGTTAATGAGCAAAATATGGATCCTGCAAGAATATCACCCACGGATTTAGTTGACAGATCTGCTAGCTCAGATGAAAGCAGTGTAGATTCTACTGGCCAGCCATCAATATCACCACCTAGAAGGGAATCTTCCAGTGTCTTTAGCTCTGAACAATCTCAAACCCATGCCAGAGCTGTTTCTGATTCCAGTGAACTTGCTAATGCTAAACTTCCTCAAGAAACACAGGGTGATGACAACAGTGCTCCTCAACTGTCAACCAGTCCAAGCTACAGTAGAGATGCATCTGGCGAATTGAATCCTGGGCAAGATGCTGCTGGAGCTGCTGCCATGCTATCTCCACATAGACAACCTGAGTTCCCACCCCGTTTTGTGGAGAGAAGATATCGCAGCCAAGCTATGTGGCGGAGACCATCCGAGAGGCTTGGTTCCAGGATAGTATCTTCTCCTGCTATTGAAACAAGAGCTGATCTGTCTGCAATTGAAAACCAGGTTCGTACCTTTGTCGAGGGTTTGAGGAGCTCTGATTTTGATACTCAGAGAGAGGCAACAGCCGAACTTCGTCTTCTTGCTAAGCACAATATGGATAATCGAATTGCAATTGCAAACTGTGGAGCCATTAGCTTATTAGTTGACTTACTTCGATCAATTGATACTAGGATCCAGGAAAATGCTGTTACAGCACTTCTCAACTTATCAATTAATGATAATAACAAAGCTGCAATTGCGACTGCTGGTGCTATTGAACCCTTGATTCATGTGCTTGAGACAGGGAGCCCAGAAGCCAAGGAGAATTCAGCTGCCACTCTTTTCAGCTTATCAGTGATTGAGGAAAACAAGATCACCATAGGGAGGTCTGGGGCAATTAGACCACTGGTTGATTTACTGGGGAATGGAACCCCTAGGGGGAAGAAAGATGCTGCAACTGCTTTGTTTAATTTATCAATATTCCATGAAAACAAGAATCGGATTGTGCAAGCTGGTGCTGTGAGGCGCCTTGTGGAGTTAATGGACCCAGCAGCTGGAATGGTTGATAAGGCAGTGGCTGTCTTAGCAAATCTTGCTACAATTCCCGAAGGATGGAATGCAATTGGTCAGGAAGGCGGGATTCCTGTTCTGGTCGAGGTTGTCGAGTTGGGTTCTACGAGAGGTAAAGAGAATGCAGCAGCAGCTCTTCTACATCTTTGCTTAAACAGTAGCAGATTTTTAAGCATGGTGCTGCAGGAAGGAGCTGTCCCACCATTAGTAGCTTTATCACAGTCAGGCACCCCAAGGGCCAAAGAAAAAGCCCAGGCTCTCCTTAATCAATTTAGAAGTCAAAGACATGGTAATGCTGGGAGGAACTGA 2484 0.436 MEISLLKMLVRSISSFLHLSFSGKKNSEPVTKYYQKAEEILKLVKPIIDVIINSDLASDEVLCKLFEELGHAVDELREHVENWQLLSSKVYFVMQAEPLISRIRTSGLNIFQLLKAFHDYLPDELSSEHVEHSVQKLKHLGRDETSSDIKEAIKEQQDGVGPSSEAMTKIADSLGLRSNEEVLIEAVALEKLKDNAEQIENTAESEYIDQIIAVITCMHERLVMLKQALSCSPVPVPADFCCPLSLELMTDPVIVASGQTYERIFIKNWIDLGLNVCPKTRQTLSHTNLIPNYTVKALIANWCESNNVKLVDPSKSMNLSQVSVLHGYLESGTTRESPVFAHSRSNQPSSPELARSRSFCSRGNKLTSGGTQQEGSLNGMVNEQNMDPARISPTDLVDRSASSDESSVDSTGQPSISPPRRESSSVFSSEQSQTHARAVSDSSELANAKLPQETQGDDNSAPQLSTSPSYSRDASGELNPGQDAAGAAAMLSPHRQPEFPPRFVERRYRSQAMWRRPSERLGSRIVSSPAIETRADLSAIENQVRTFVEGLRSSDFDTQREATAELRLLAKHNMDNRIAIANCGAISLLVDLLRSIDTRIQENAVTALLNLSINDNNKAAIATAGAIEPLIHVLETGSPEAKENSAATLFSLSVIEENKITIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIFHENKNRIVQAGAVRRLVELMDPAAGMVDKAVAVLANLATIPEGWNAIGQEGGIPVLVEVVELGSTRGKENAAAALLHLCLNSSRFLSMVLQEGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNAGRN 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0432 827 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 823 - -
Lal3g0432 827 Gene3D - 523 823 IPR011989 -
Lal3g0432 827 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Lal3g0432 827 PANTHER U BOX DOMAIN-CONTAINING 9 823 - -
Lal3g0432 827 Pfam Armadillo/beta-catenin-like repeat 575 612 IPR000225 GO:0005515
Lal3g0432 827 Pfam Armadillo/beta-catenin-like repeat 614 653 IPR000225 GO:0005515
Lal3g0432 827 Pfam Armadillo/beta-catenin-like repeat 657 694 IPR000225 GO:0005515
Lal3g0432 827 Coils Coil 179 209 - -
Lal3g0432 827 MobiDBLite consensus disorder prediction 396 476 - -
Lal3g0432 827 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 666 708 IPR000225 GO:0005515
Lal3g0432 827 SMART arm_5 696 735 IPR000225 GO:0005515
Lal3g0432 827 SMART arm_5 736 776 IPR000225 GO:0005515
Lal3g0432 827 SMART arm_5 573 613 IPR000225 GO:0005515
Lal3g0432 827 SMART arm_5 614 654 IPR000225 GO:0005515
Lal3g0432 827 SMART arm_5 655 695 IPR000225 GO:0005515
Lal3g0432 827 SMART arm_5 527 571 IPR000225 GO:0005515
Lal3g0432 827 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 310 IPR013083 -
Lal3g0432 827 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 625 667 IPR000225 GO:0005515
Lal3g0432 827 SUPERFAMILY ARM repeat 541 816 IPR016024 -
Lal3g0432 827 MobiDBLite consensus disorder prediction 336 503 - -
Lal3g0432 827 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
Lal3g0432 827 CDD RING-Ubox_PUB 240 282 IPR045210 -
Lal3g0432 827 SUPERFAMILY RING/U-box 227 312 - -
Lal3g0432 827 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 707 748 IPR000225 GO:0005515
Lal3g0432 827 MobiDBLite consensus disorder prediction 336 389 - -
Lal3g0432 827 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 584 626 IPR000225 GO:0005515
Lal3g0432 827 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0432 Lal-Chr3 3004767 3011250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0432 196 826 U-box Gene Family AT2G23140 63.453 0.0 744
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0432 - - gmx:100811250 1244.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1280 5 15494579 15500102 Lal3g0432 3 3004767 3011250 LSH
Lal3g0432 3 3004767 3011250 Lal22g0326 22 2061579 2066478 PCT
Lal22g0326 22 2061579 2066478 Lal3g0432 3 3004767 3011250 PCT