Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0423 ATGACTGGAAAAAAGCTTAACCTCTCATACATAGCGAGTGATGCAAAGAGAAGGGTAACATTAAAGAAAAGGAAAAATAGTCTTATCAAGAAGATGGGTGAAATCACCACCCTTTGTGGAATTGAAGCTTGTGCTGTAATATCTACTCACAATGAACTTCAACCAGAGGTTTGGCCATCCCATTTTGGGGTCCAAAAGGTCCTATCAAAGTTCAAGAGAATGTCAGAAACCGAACGATGCATGAAGATGTTGAATCAAGAGAGTTTCATGAACCAAAGAATCATGAAGGCACAAGAGCAATTGAAAAAACTGAGGAGTGAGAATAAGAAGAAAGAAACAACCCTTCTCATGTATCAATGCCTACGTAGTGGAAACATTGATGGGAATATTAATATGGCTAATATGAATGATATATCATGGATGATTGATCAAACACTGAAAGAGATTGAAAAACAAACCACTATGGGCCAACCCCAAGAAGGGACACTAGCTTTTTCAAATGTGCCAGAAGCCATGAATGGAAAGAAGGGATAA 534 0.382 MTGKKLNLSYIASDAKRRVTLKKRKNSLIKKMGEITTLCGIEACAVISTHNELQPEVWPSHFGVQKVLSKFKRMSETERCMKMLNQESFMNQRIMKAQEQLKKLRSENKKKETTLLMYQCLRSGNIDGNINMANMNDISWMIDQTLKEIEKQTTMGQPQEGTLAFSNVPEAMNGKKG 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0423 177 SUPERFAMILY SRF-like 4 95 IPR036879 GO:0003677|GO:0046983
Lal3g0423 177 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Lal3g0423 177 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal3g0423 177 PANTHER MADS BOX PROTEIN 2 158 - -
Lal3g0423 177 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 158 - -
Lal3g0423 177 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lal3g0423 177 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Lal3g0423 177 Coils Coil 87 114 - -
Lal3g0423 177 Gene3D - 14 118 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0423 Lal-Chr3 2921368 2921901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0423 1 152 Type I MADS-box Gene Family AT5G48670 45.098 1.75e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal3g0423 SRF-TF 5.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0423 - - lang:109329409 229.18