Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0421 ATGCCTGATTTCCCCGATTCCCTCACGCCGCCGGCCACCACCACCCGCCCCCTCCCCGTCCGCGAAGACTGCTGGACGGAGGATGCCTCCTCCACCCTCGTCGACGCCTGGGGCCGACGCTACCTCGACCTTAACCGCGGCAACCTCCGCCAAAAGGATTGGCAGGATGTCGCTGACGCCGTTAACGCCCTCCACGCCCACTCTAAGAAAACTCACCGTACCGACGTTCAGTGTAAGAATCGCATCGACACTATTAAGAAGAAATACAAGATCGAGAAAGCTAGGGTTGCGTCATCAAACGGCGTCGTTTCGTCTTGGCCTTTTTTTGAACGATTAGATGCTCTTATTGGCCCTAATTTCATTGCCAAAAAATCCACATCCTCTCCATCGCCGTCTCCCCCGGTGGCGCTCCCTCTCTTGCCGTATCGTAAAACACAATCCTCCGTGGCTGCACCGTTTACCTCTGTCGTGCTGCCGCAGAAGCGGGCCGCGGCAGCAATTGATGATGGTTACTTTAGGAGGAATTATTCAGCGATGGCGGCCGCTGCGGCTGCTGCTGAGGCTGATGAGGAGGAAGAAGATGAGGAGGAGGAGGAGGAAGAAGAAGATATGATGGAGGATGAAGGAAGAGGTAGTGAAGTAGAGGAAGGAGAGAGAGATAAGGGGAGAGAAGGAATGAGAAGGTTGGCAAAGGCGATAGAGAGGTTTGGGGAAGTGTATGAGAGAGTGGAAGGGCAGAAACTTAGGTACATGGTGGATTTGGAGAAACAGAGGATGCAATTTACTAAAGATCTTGAAGTTCAGAGGATGCAGATGTTTATGGACACACAAGTTCAGTTAGAGAGGATTAAGCGCGGGAAGAGATCTGGTTCTAATGCTGTCGTTTACTGGTAG 894 0.5257 MPDFPDSLTPPATTTRPLPVREDCWTEDASSTLVDAWGRRYLDLNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKYKIEKARVASSNGVVSSWPFFERLDALIGPNFIAKKSTSSPSPSPPVALPLLPYRKTQSSVAAPFTSVVLPQKRAAAAIDDGYFRRNYSAMAAAAAAAEADEEEEDEEEEEEEEDMMEDEGRGSEVEEGERDKGREGMRRLAKAIERFGEVYERVEGQKLRYMVDLEKQRMQFTKDLEVQRMQMFMDTQVQLERIKRGKRSGSNAVVYW 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0421 297 MobiDBLite consensus disorder prediction 183 225 - -
Lal3g0421 297 Pfam Myb/SANT-like DNA-binding domain 22 115 IPR044822 -
Lal3g0421 297 Gene3D - 25 91 - -
Lal3g0421 297 MobiDBLite consensus disorder prediction 186 211 - -
Lal3g0421 297 Coils Coil 178 208 - -
Lal3g0421 297 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 8 292 IPR044823 -
Lal3g0421 297 PANTHER OS05G0560600 PROTEIN 8 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0421 Lal-Chr3 2913789 2916038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0421 21 293 Trihelix Transcription Factor Family AT3G14180 32.394 1.51e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lal3g0421 Myb_DNA-bind_4 4.4e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0421 - - gmx:100785349 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0421 3 2913789 2916038 Lal3g0421 3 2913789 2916038 ECH
Lal5g1296 5 15655919 15663564 Lal3g0421 3 2913789 2916038 ECH
Lal5g1296 5 15655919 15663564 Lal3g0421 3 2913789 2916038 LSH
Lal3g0421 3 2913789 2916038 Lal11g0554 11 4455670 4462466 LSH