Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0417 ATGGAGAACAAAGAAAAAACTATTCTTATGCAAAGGTATGAACTAGGCCGGTTGCTCGGTCAAGGCAATTTCGCCAAAGTTTACCATGCAAGGAACTTAAAGACAGGGCAAAGTGTTGCAATCAAGGTGTTTAACAAAGAAATGGTTACAAGGGTTGGCATGATAGAGCAAATCAAGCGTGAAATCTCGATTATGCGTCGTTTAAGGCATCCGAATGTTGTGCAGCTATATGAAGTAATGGCAAGCAAAACCAAGATATATTTTGTGATGGAATGTGTGAAAGGCGGGGAGCTTTTCGATAAAGTGTCCCGAGGGAAGTTGAGGGAAGATGTTGCAAGAAAATATTTCCAAGCATTGATTGATGCTGTTGATTATTGTCACAGCAAAGGGGTGTTTCACCGCGACCTCAAACCGGAGAATGTTCTGTTGGATGAGAATGGAGACCTGAAGATTTCCGATTTTGGTTTGAGTGCATTGTTGGAGTCTAGGAAGATCGATGGCCTTCTTCACACGACGTGTGGAACACCGGCTTATGTAGCGCCTGAGGTGATAAAGAAAAAAGGATATGATGGAGATAAGGCAGATATTTGGTCTTGTGGTGTAATTCTCTATGTTCTCTTGGCTGGATATCTTCCTTTCAATGATAGAAATCTAATGGAAATGTATAGGAAGATTGGCAAAGGAGATTTTAAGTGTCCACCATGGATTGCAGCAGATTCTAAAAAGCTTCTAAGAAGAATCCTTGATCCTAATCCAAAGACAAGAATTAGTATTACAAGAATCATGGATAATAGTTGGTTTAGAAAAGGGTATAAGCAGATTGAAGCATCAAAGTGTCCACCCCTATCAAATAGAGATGGTGAGGATTTTATGGATATTGAGGCTGCATTTTCTTCACCAAATTCAGAAGCTAGCACAATGTTAACTAGAGAAGAATATGCCATGAAGCCATACTATTTCAATGCATTTGATCTCATATCAATCTCTTCAGGATTTGATCTTTCTGGTTTGTTTGAAAGAGATATGATAAGCCAAAGAGAAGAGGCTAGGTTTATTACTACAAAACCACCTTCAATGATTGTGTCAAAACTTGAAGAGATAGCATATAAAGATAGTATATTTAAGGTCATGAAGAAAAATGGAACTGTTAGATTGGAAGGAAAAAAGACAGGGAGACAAAGCCAACTCATTATAGATGCAGAAATATTTGAGGTTACTTCTTCATTCCATATTGTTGAGGTGAAGAAAACTTTTGGAGATTCATTGGAATATTGGAAATTATGGGAACATGACTTAAAGCCTTCTCTAAATGAAATAGTTTTGGCTTGGCAAGTATGTGACTAA 1344 0.3795 MENKEKTILMQRYELGRLLGQGNFAKVYHARNLKTGQSVAIKVFNKEMVTRVGMIEQIKREISIMRRLRHPNVVQLYEVMASKTKIYFVMECVKGGELFDKVSRGKLREDVARKYFQALIDAVDYCHSKGVFHRDLKPENVLLDENGDLKISDFGLSALLESRKIDGLLHTTCGTPAYVAPEVIKKKGYDGDKADIWSCGVILYVLLAGYLPFNDRNLMEMYRKIGKGDFKCPPWIAADSKKLLRRILDPNPKTRISITRIMDNSWFRKGYKQIEASKCPPLSNRDGEDFMDIEAAFSSPNSEASTMLTREEYAMKPYYFNAFDLISISSGFDLSGLFERDMISQREEARFITTKPPSMIVSKLEEIAYKDSIFKVMKKNGTVRLEGKKTGRQSQLIIDAEIFEVTSSFHIVEVKKTFGDSLEYWKLWEHDLKPSLNEIVLAWQVCD 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0417 447 CDD STKc_SnRK3 12 266 - -
Lal3g0417 447 SUPERFAMILY Protein kinase-like (PK-like) 9 304 IPR011009 -
Lal3g0417 447 ProSiteProfiles NAF domain profile. 315 339 IPR018451 GO:0007165
Lal3g0417 447 Pfam Protein kinase domain 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0417 447 Gene3D Kinase associated domain 1, KA1 319 443 - -
Lal3g0417 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Lal3g0417 447 Pfam NAF domain 318 378 IPR004041 GO:0007165
Lal3g0417 447 Gene3D Transferase(Phosphotransferase) domain 1 3 318 - -
Lal3g0417 447 ProSiteProfiles Protein kinase domain profile. 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0417 447 SMART serkin_6 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0417 447 CDD CIPK_C 321 437 - -
Lal3g0417 447 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Lal3g0417 447 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 4 445 - -
Lal3g0417 447 PANTHER - 4 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0417 Lal-Chr3 2892213 2893556 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0417 3 444 CBL-interacting serine-threonine protein kinases AT5G45820 63.431 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lal3g0417 Pkinase 1.5e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0417 K07198 - gmx:100807927 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0417 3 2892213 2893556 Lal3g0417 3 2892213 2893556 ECH
Lal3g0417 3 2892213 2893556 Lal4g1598 4 20158107 20160049 ECH
Lal14g0790 14 9840179 9841848 Lal3g0417 3 2892213 2893556 ECH
Lal9g1714 9 19385994 19388894 Lal3g0417 3 2892213 2893556 ECH