Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0416 ATGGCGGAAATCGTTTCAAACAGAGTTAACACCAATTCCAAAAGCAGCAAAAAGAAAGAAACATCAAATCTACTACTGGGTCGTTTTGAAATCGGAAAACTCCTGGGTCAAGGAACCTTTGCAAAGGTGTACTATGCAACCAACATAAAAACTGGTGAAGGGGTGGCCATAAAGGTGATAGACAAAGAAAAAATACTGAAGGGTGGTCTTGTGGCGCATATTAAGCGTGAAATCTCTATCATGCACCGTGTGCGCCACCCCAACATTGTGCAACTCTTTGAGGTTATGGCCACAAAGTCAAAGATCTACTTTGTGATGGAATATGTTCGAGGGGGTGAGCTTTTCAACAAAGTTTCAAAGGGAAGGTTAAAGGAAGAAGTTGCAAGGAAGTACTTTCAGCAATTGATCTCAGCTGTTGAGTTTTGTCATGCTAGAGGTGTGTACCATAGGGATATTAAACCTGAGAATTTGTTAGTTGATGAAAATGGTAACCTTAAAGTTTCTGATTTTGGACTTAGTGCTGTGTCTGATCAAATTAGGCAAGATGAGTTGTTCCACACTTTTTGTGGGACACCTGCCTATGTTGCCCCTGAGGTTTTGAGTAGTAGAGGGTATGATGGTGCAAAAGTTGATATTTGGTCTTGTGGTGTTGTTTTGTTTGTTTTAATGGCAGGGTATTTACCTTTTAATGATAAAAACATTATGGCTATGTATAGGAGAATTTATAGAGGTGATTTTAGGTGTCCTAGGTGGTTCTCTCCTCATCTTTCCAAGTTCCTAGCACTACTTCTTGTTACAAAACCTGAATCCAGGATTGGAATTCCTGAAATCATGAAGAATAAGTGGTTCAAGAAAGGTTTCAAGAAAGTTAAGTTTTATGTTGAGGATGATAGGCTTTGTAATGTTGATGATAGTCTTGTGGATAATGAGGATGATGTAGCATTGGTTGTTTCGGATTATTCGGTTTCAGAATCTGATTCTGAGAGTGAGAGTCAGAGAAGGAATGCTGCATTGCCAAGACCAGCAAGTTTGAATGCTTTTGACATTATATCATTTTCTAGGGGCTTTGATCTCTCTGGATTGTTTGAGGAAAAAGGGGATGAGGCCAGGTTTGTGACTTCTGTGCCAGTGTCAAAGATTATGTCAAAATTGGAGGAAATTGCTCACTTGTTTAGCTTTAGTGTAAGGAAGAAAGATTATAGGGTGAGCTTGGAGGGTACTAGAGAAAGTGTAAAGGGACCCTTAACCATTGCTGTTGAGATATTTGAATTGACACCTTTATTGGTTGTGGTGGAAGTGAAGAAAAAAGGAGGGGATATAATGGAGTATGAAAAGTTTTTGACCACTGAGTTGAAACCTGGCCTAGAGAATTTGATGCTGGATGAAACTGCCACTACTTCATATTCTGCTGCACCAACTCAGCCGCATCCCCTTCTACGCATTCGCACCGTGCCGATGCACTTGTCTTCAGAGATTGGATCTCCTCACTTCATGCATTCAGATACTGAATCTCCACACTACATTCCTTCAGATAATGAATCTCCACACTACATGCCTTCAGATAATGAATCTCTACACTACATGCCTTCAGATTCAGAGCCATGA 1605 0.4025 MAEIVSNRVNTNSKSSKKKETSNLLLGRFEIGKLLGQGTFAKVYYATNIKTGEGVAIKVIDKEKILKGGLVAHIKREISIMHRVRHPNIVQLFEVMATKSKIYFVMEYVRGGELFNKVSKGRLKEEVARKYFQQLISAVEFCHARGVYHRDIKPENLLVDENGNLKVSDFGLSAVSDQIRQDELFHTFCGTPAYVAPEVLSSRGYDGAKVDIWSCGVVLFVLMAGYLPFNDKNIMAMYRRIYRGDFRCPRWFSPHLSKFLALLLVTKPESRIGIPEIMKNKWFKKGFKKVKFYVEDDRLCNVDDSLVDNEDDVALVVSDYSVSESDSESESQRRNAALPRPASLNAFDIISFSRGFDLSGLFEEKGDEARFVTSVPVSKIMSKLEEIAHLFSFSVRKKDYRVSLEGTRESVKGPLTIAVEIFELTPLLVVVEVKKKGGDIMEYEKFLTTELKPGLENLMLDETATTSYSAAPTQPHPLLRIRTVPMHLSSEIGSPHFMHSDTESPHYIPSDNESPHYMPSDNESLHYMPSDSEP 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0416 534 ProSiteProfiles Protein kinase domain profile. 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0416 534 ProSiteProfiles NAF domain profile. 339 363 IPR018451 GO:0007165
Lal3g0416 534 SMART serkin_6 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0416 534 PANTHER - 13 471 - -
Lal3g0416 534 CDD CIPK_C 345 455 - -
Lal3g0416 534 Gene3D Kinase associated domain 1, KA1 340 460 - -
Lal3g0416 534 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Lal3g0416 534 SUPERFAMILY Protein kinase-like (PK-like) 25 284 IPR011009 -
Lal3g0416 534 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 19 13 471 - -
Lal3g0416 534 MobiDBLite consensus disorder prediction 492 534 - -
Lal3g0416 534 Gene3D Transferase(Phosphotransferase) domain 1 18 339 - -
Lal3g0416 534 MobiDBLite consensus disorder prediction 505 534 - -
Lal3g0416 534 ProSitePatterns Protein kinases ATP-binding region signature. 35 58 IPR017441 GO:0005524
Lal3g0416 534 Pfam Protein kinase domain 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0416 534 Pfam NAF domain 341 397 IPR004041 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0416 Lal-Chr3 2887304 2888908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0416 24 475 CBL-interacting serine-threonine protein kinases AT4G18700 73.377 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lal3g0416 Pkinase 5.2e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0416 - - gmx:100790133 741.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0416 3 2887304 2888908 Lal3g0416 3 2887304 2888908 ECH
Lal5g1302 5 15721678 15723270 Lal3g0416 3 2887304 2888908 LSH