Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0412 ATGTACTTGTCTTTCTCTTCCTTTCTTCTTCATTTCTTTCTCTTCCTTCACTATTCTCTTCTTCACCCTTTTTTAGATTCTTCTTTACTCTCTCTTCTTTCCTCCATGGCTGAGGATAAGGAGACGCCTACCTCTATTGTTAATGGAAATGATTCCCTTACTGGTCACATCATCTCTACAACAATTGGAGGCAAAAATGGGGAGCCCAAACAGACTATCAGTTACATGGCAGAACGCGTTGTAGGAACTGGATCATTTGGAATTGCAAAATGCTTGGAAACTGGGGAGGCAGTGGCCATTAAGAAGGTTTTACAGGACCGTAGATATAAAAATCGTGAACTGCAGTTAATGCGTGTGATGAATCATCCAAATGTGGTCTCTCTGAAGCACTGTTTCTTTTCAACTACAAGTACAGATGAACTTTTTCTTAACTTGGTGATGGAATATGTTCCAGAGTCAATGTATCGGGTCATAAAGCACTACACTAATGCTAATCAAAGAATGCCAATTATCTATGTAAAACTTTACATGTACCAGATTTTTAGGGGTTTGGCTTATATCCACACTGTTCCTGGAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTCGTTGATCCTCTTACACACCAAGTTAAGCTATGTGATTTTGGAAGTGCAAAAATGCTAGTCAAAGGCGAAGCTAATATATCATACATATGTTCACGGTTCTATCGAGCTCCAGAACTTATATTCGGTGCCACAGAGTATACTACTTCGATTGATATCTGGTCAGCTGGCTGCGTCCTTGCTGAACTGATTTTGGGCCAGCCATTATTCCCCGGCGAAAGTGCAGTGGATCAGCTTGTACATATTATAAAGGTGCTTGGAACACCCACTCGAGAGGAAGTACGGTGTATGAATCCCAATTACAATGACTTCAGGTTTCCACAGATTAAAGCACACCCATGGCACAAGATTTTCCACAAAAAGATGCCCCCAGAAGCTATTGATCTTGCTTCACGGCTTTTGCAATACTCTCCGAGTCTTCGATGTTCTGCACTTGAAGCTTGTGCACATCCTTTCTTTGATGAACTCCGAGAACCCAATGCTCGCCTGCCAAATGGCCGTCCATTACCCCCTCTTTTCAACTTCAAACAGGAATTATCCGGAGCATCTCCAGAGCTTGTTAATAAGTTGATACCTGACCATGTGAAGCGGCAAATAGGGCTACACTTTGCTCATCAGGCTGCATCATGA 1239 0.4205 MYLSFSSFLLHFFLFLHYSLLHPFLDSSLLSLLSSMAEDKETPTSIVNGNDSLTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIAKCLETGEAVAIKKVLQDRRYKNRELQLMRVMNHPNVVSLKHCFFSTTSTDELFLNLVMEYVPESMYRVIKHYTNANQRMPIIYVKLYMYQIFRGLAYIHTVPGVCHRDLKPQNILVDPLTHQVKLCDFGSAKMLVKGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELILGQPLFPGESAVDQLVHIIKVLGTPTREEVRCMNPNYNDFRFPQIKAHPWHKIFHKKMPPEAIDLASRLLQYSPSLRCSALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELSGASPELVNKLIPDHVKRQIGLHFAHQAAS 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0412 412 SUPERFAMILY Protein kinase-like (PK-like) 74 380 IPR011009 -
Lal3g0412 412 Gene3D Transferase(Phosphotransferase) domain 1 152 399 - -
Lal3g0412 412 PANTHER BNAANNG31110D PROTEIN 36 406 - -
Lal3g0412 412 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 36 406 - -
Lal3g0412 412 Pfam Protein kinase domain 75 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0412 412 ProSiteProfiles Protein kinase domain profile. 75 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0412 412 Gene3D Phosphorylase Kinase; domain 1 60 151 - -
Lal3g0412 412 CDD STKc_GSK3 70 359 IPR039192 -
Lal3g0412 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Lal3g0412 412 SMART serkin_6 75 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0412 412 ProSitePatterns Protein kinases ATP-binding region signature. 81 102 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0412 Lal-Chr3 2860243 2864632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0412 79 394 MAP Kinase Gene Family AT3G59790 35.030 7.54e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Lal3g0412 Pkinase 6.8e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0412 K14502 - gmx:100779909 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0412 3 2860243 2864632 Lal3g0412 3 2860243 2864632 ECH
Lal5g1306 5 15751742 15756178 Lal3g0412 3 2860243 2864632 ECH
Lal5g1306 5 15751742 15756178 Lal3g0412 3 2860243 2864632 LSH
Lal3g0412 3 2860243 2864632 Lal14g1212 14 14074457 14078444 PCT