Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0411 ATGGATCAAGATAGAAGCATAGGTAGAGGTGAGGTGTTGGATCATGTTCATGAAGGGGTTGATGAGAATTTGAGTATTTTGGTTGAAGGGGTTGCAATTGATGCAGTAGATGGGGGTAGCTTGGGTGGAAGAGCTTGTATAAGTGGAGAAGTTAGGACTTCAAAAGAGACGGGTAGCGGTTCGGGTTTGAATAAAGAGCTAACAGAGGGGGTTGAGGAAGTTAAGGATCCTGATGAAGAAAAAATCAGTGATACTTCGATGGTGGTTGATCAAGGGGCAAGTAATAATTCAAACCATTTGGTTAATCATGAGATGCTTGAGACTGTTGCTGCAATAGAATTTGTTCAGAATGACTATGTAAATGGAGGCAATAGGAAATTGGAAGCAAAAGATACTGAATCAGGGTTGAGCAAAGTACCCTTGAAAACAATGAAAGGGTCAAGCGATGTAAATTCGTGTGTGATTGATATAAAGTGCGGCAGTCGCAACGGGTTAAGTGAGAGTTCAGAAGGTGAAAGGATTTGTAGGATTTGCCATCTTACTTCTGGGCAACCATCAGAGGCAACAGCCGTTGGCATTGCTAACAGCGATAGTAATGCAGATTTGATTCAGCTTGGATGTGCTTGTAAAGATGAGTTAGGCATTGCCCACATTCATTGTGCGGAGGCATGGTTCAGGATTAAAGGAAACAGAGTATGTGAAATATGTGGCGAGACTGCAAAAAATGTTGTGGGTTTTGCTGATCCTGGATTTATGGTCGAGTGGAACGAAAGAAGATTAATGGATGTAGAGAGCAACTCATCACGCAGGTTTGTTGGATGCTGGCGAGGGCAACCATTTTGTAACTTCTTGATGGCATGCCTGGTTATAGCTTTTGTTCTGCCATGGTTTTTTCGTGTAAATATGTTCTAA 912 0.4211 MDQDRSIGRGEVLDHVHEGVDENLSILVEGVAIDAVDGGSLGGRACISGEVRTSKETGSGSGLNKELTEGVEEVKDPDEEKISDTSMVVDQGASNNSNHLVNHEMLETVAAIEFVQNDYVNGGNRKLEAKDTESGLSKVPLKTMKGSSDVNSCVIDIKCGSRNGLSESSEGERICRICHLTSGQPSEATAVGIANSDSNADLIQLGCACKDELGIAHIHCAEAWFRIKGNRVCEICGETAKNVVGFADPGFMVEWNERRLMDVESNSSRRFVGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0411 303 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 303 - -
Lal3g0411 303 SMART ringv_2 174 237 IPR011016 GO:0008270
Lal3g0411 303 PANTHER ZINC FINGER, RING-CH-TYPE 1 303 - -
Lal3g0411 303 ProSiteProfiles Zinc finger RING-CH-type profile. 167 243 IPR011016 GO:0008270
Lal3g0411 303 SUPERFAMILY RING/U-box 170 239 - -
Lal3g0411 303 MobiDBLite consensus disorder prediction 68 82 - -
Lal3g0411 303 Pfam RING-variant domain 175 236 IPR011016 GO:0008270
Lal3g0411 303 MobiDBLite consensus disorder prediction 52 82 - -
Lal3g0411 303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 246 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0411 Lal-Chr3 2853690 2856510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0411 145 302 C3H Transcription Factor Family AT5G05830 38.922 1.45e-30 112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0411 3 2853690 2856510 Lal3g0411 3 2853690 2856510 ECH
Lal3g0411 3 2853690 2856510 Lal11g0548 11 4401943 4404323 LSH
Lal7g0689 7 13885202 13888808 Lal3g0411 3 2853690 2856510 PCT
Lal3g0411 3 2853690 2856510 Lal7g0689 7 13885202 13888808 PCT