Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0410 ATGGCATCAGAGAAGAAGTTATCGAACCCTATGAGGGAAATCAAGGTGCAGAAACTCGTCCTCAACATCTCCGTTGGTGAGAGTGGCGATCGTCTCACCAGAGCTGCCAAGGTTTTGGAACAATTGAGTGGCCAAACCCCTGTTTTCTCCAAGGCTAGGTATACTGTTAGATCTTTCGGAATCAGGCGAAACGAAAAGATTGCTTGCTATGTCACTGTCAGGGGTGATAAGGCAATGCAGCTCCTTGAGAGTGGATTGAAGGTTAAGGAGTATGAACTGTTGAGGAGAAACTTCAGTGACACTGGTTGTTTTGGATTTGGTATTCAGGAGCACATTGATCTTGGAATCAAGTATGACCCTTCAACTGGTATCTATGGTATGGATTTCTATGTTGTTTTAGAACGCCCTGGATACCGTGTTGGCCGACGCCGAAGATGCAAGGCCCGGGTTGGAATTCAGCATAGGGTGACCAAAGAGGATGCAATGAAGTGGTTCCAAGTTAAATATGAAGGAGTTATTCTCAACAAGTCCCAAAATATTTCTTAG 546 0.4487 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVGRRRRCKARVGIQHRVTKEDAMKWFQVKYEGVILNKSQNIS 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0410 181 Gene3D - 2 177 IPR022803 -
Lal3g0410 181 Pfam Ribosomal protein L5 9 62 IPR031310 -
Lal3g0410 181 ProSitePatterns Ribosomal protein L5 signature. 39 55 IPR020929 GO:0003735|GO:0005840|GO:0006412
Lal3g0410 181 PANTHER 60S RIBOSOMAL PROTEIN L11-1 1 180 - -
Lal3g0410 181 SUPERFAMILY RL5-like 8 173 IPR022803 -
Lal3g0410 181 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 1 172 IPR002132 GO:0003735|GO:0005840|GO:0006412
Lal3g0410 181 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 1 180 IPR002132 GO:0003735|GO:0005840|GO:0006412
Lal3g0410 181 Pfam ribosomal L5P family C-terminus 66 164 IPR031309 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0410 Lal-Chr3 2850547 2852470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0410 1 181 Cytoplasmic Ribosomal Protein Gene Family AT2G42740 96.685 1.42e-131 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0410 K02868 - thj:104806164 340.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0410 3 2850547 2852470 Lal3g0410 3 2850547 2852470 ECH
Lal5g1308 5 15764399 15780374 Lal3g0410 3 2850547 2852470 ECH