Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0402 ATGACTAGGGCTGTTAGGAATAGGGTACTCAAGGATTCCAATGGTGATATTAGTGACCATCTACGAAACCATATCCATTTAACAAATTGCATTCACTTGAAGAACCATATGCACAAGAACAGTCCCATACTGGCTGATAGGTCACTCATGAGAGACCTTGTTGTGCTGCAGAGATCGCGCTCTCTCAGGGACCCTTCAGCTAGCCCTCCATCATGGCATTCACCCTCTGTAGTTGATGTGCTCTTCAAGAGAGCTGAGAATGATGCCATGGTTCAAGAGGGAAGAAGGTCTGTTGGTGTCGAGCGCAGGAAAGGAGGAAGGAGATTGTCTGGAACCTCACCCCCGTTGGCGAGTATAGGTACATCGAGGGTTGTTCAGGGTGAAGGTAGTGTGGGTAATGATAGGGTTCCAGCAAATAGTGAACGTAGTAGCAGGAGTGGAGTTGGGAATGGGAGGAGAGTTGCGAGAGAAGAATCGGGTAGGAAGAGTGATAGGCCTGATTATTTCGATGTTAGTCAAGAGCGGCAATTCAGTCAAGCTGGCAAAAGTTTGGCTGAAGATGTTATTTCAAGGCACTCTGAATCTAAAGAGAGAAAGAGCAAACAAAGAGTGAAGAATTTTCATGCAAAGACCCTTTCTGTGCAGCTGAATGATGTTCTGTTGGAAAGTGATGATTTGGCGTCATCAAACATGCATTTTCAACGAAGGTTTCCGAGACAGGAGAAAATTATTGAGGAGGCAGAAACCAGCATGTGTGGTCATGGAAGTGGGTTGAATAGGGGTAAGAGGCGTAAATTTCGAAACACGAGAAGAACTCGAGTTGCTACAGGATCAAGAGATATTGGAGCTGAGAATGAATTGTCTGTGGCTTCCAACTCATTAGCTCAGGGTTCAGCTCACCAGAAATATGAGAAAGAGGAGGATGATAACAATGTAGATCAAAATGTTACTAGGGCTCCGAAGAATGGGTGTGGCATTCCTTGGAATTGGTCCAGAATTCATCATAGAGGTAAATCATTCCTTGATCTAGCTGGAAGAAGTTTCACTTCTTGTGGTTTATCTGACCCGAAGTTAAAGAAGGGGGAATTAACCGCCGATGGAAGAAATATTCCTGAGATGCCAGTGGCATCTGAGTACTCAAGCTCATCTACTAAATCTGATGGTGAGTCACTGCCTTTACTATTTGAGGGATCTAGATCTCATGGAAGCACTGAAAATGCTTGTAGGGACCATGACTATTCTGGGGAACTAGCTCTTTTTGGTAACAATTTATTCAAGCACGATATTGATTCTGACCTTGCTTCTGAAGCTAGATCTGGTGACCAACATAAGTTGAGAGGGAATGGCCATAGTAGACACCAAAGCTTAACACAAAAATATATGCCACGAACCTTCAGCGATATGGTTGGACAGAATTTAGTGGCACAAGCTCTTTCAAATGCAGTGATAAGAAGGAAAGTTGGATTGTTATATGTGTTTTATGGTCCCCATGGCACAGGAAAAACTTCCTGTGCTCGCATATTTGCCCGAGCTTTGAATTGTAATTCTTCAGAACATCTGAAACCTTGTGGCTTTTGCGATTATTGCGTTGCACATGACATGGGTAAGAGTAGAAATATAAGAGAAGTTGGTCCGGTCAGTAATTTTGACTTTGAGAGCATCATTGATCTACTTAACAATATGGTTGTTTCCAAGCTTTACTCACAGTACAGAGTATTTATTTTCGATGACTGTGATACTCTGTCGCCAGATTGTTGGAATGCTATATCAAAGGTCATTGATCGAGGACCTAGACGTCTGGTGTTTATCCTTGTCAGTTCTAGTCTTGATGTCTTGCCTCATATAATAACATCCAGGTGTCAAAAATTCTTTTTCCCAAAGCTCAAGGACACGGATATTATATATACATTGCAGTGGATTGCAACCAAAGAAGGTCTAGAAATTGATAAGGATGCCCTGAAACTCATTGCTTCAAGATCAGATGGATCATTAAGAGATGCTGAGATGACCCTTGAACAACTTAGTTTGCTTGGGCAGAGAATCAGTGTTCCTCTTGTTCAAGAACTGGTAGGGCTTATCTCTGATGAGAAGTTGGTTGATCTGCTTGATTTAGCATTATCTGCAGACACTGTCAACACTGTGAAAAATTTGAGAGTGATCATGGAAACTGGCGTCGAGCCATTAGCTTTAATGCCACAACTTGCTACAGTAATTACTGATATACTTGCTGGGACCTATGATTTCACAATAGAAAGGCGAAGAAGGAAATTCTTTAAGAGACAGCCATTGTCCAAAGAAGATATGGAAAAGCTTCGCCAAGCTCTGAAAACTTTATCCGAGGCTGAAAAGCAGTTGAGGATGTCCAATGACAAGCTAACATGGTTGACAGCTGCATTGCTTCAACTTGCTCCTGACCAGCAATATTTGTTGCCTACTTCATCTGATAATAGTTTCAACCATACTCCCTTGGCTCTAAACAATGCACATGTGCAACAAGCGTCCAGAATAACTGGTAATCCTGTTGAAATTCATGGCAAAGCGAGACGATTGTCAATGGATGATAGAATAGAAAATTTCCATGCTGAAAGCTCAACTAATGGTGTGACAAAGGGTGTTAATTCGGAGAAAATAAGACATAGTGTGTCTGGTGTCGCTCCTCAACATCTTTATTCTCGTACAACCGATAATAGTAGGATGCATGAAAGGCAGATTTTGGGTAAAAACCGTAAAGCAATTGAAGAGATATGGTTAGAGGTGCTTGAAAGGATTCAAATTAGTGGTCTAAAAGAGTTCTTGTATAAAGAAGGCAAGCTGATCTTTGTTAGTTTTGGAGCAGCTCCAACTGTGCAACTAATGTTTAGTTCTCAACTGACGAAATCTACTGCCGAGAAGTTCACAGGTCACATCTTACAAGCATTCGAGTCTGTCATCGGATCTTCAATAACGATAGAAATTAGATGTGAGACAAACAAGTATGCATGCGCAGTTCAACAGCCTCTTATATTGCCTGGTATTAACAATTGTTCATCTCAGATTAGAGACTCAAATGGTGATGCCATTCAAGATCATCCTTCACTAACTGATTCTGTTGATAAGAGAAAGGGTGAAATCGTGGAAGAAGCAGCTTCTCCAGTGCAGCACCGGAATGATGAGCACCAGATTGATGCTCACACAGCATCTTATAGAAGTCCAGGAGGTACAGGTATAGGACTAGCATCGGTTTCACAAAAAGAGCCAATTGTTAAGTCACATTTAGACAGAAGAAAGCTTTGTGAACAAGGCCAAAGTCGAAGTCTCGTAAGAAGTAAGATATCTCTTGCTCATGTAATCCAGAACGCAGAAGGTCGGCGAAATGTGTGGTCAAAACGCAAAGCAGTTTCTATTGCTGAAAAGCTTGAACAAGAGAATCTGAGACTGGAACCAAGATCAAGGAGCTTACTATGCTGGAAAGCATCGAAAGCAACCCGACGGAAGCTGTCGCGCTTGAAAATTCGAAGCCGAAAACCATATGCATTGTTGAAGCTTGTTTCATGTGGGAAATGTATGTCCACAAAATCTCCAAGGTAG 3567 0.4197 MTRAVRNRVLKDSNGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSLMRDLVVLQRSRSLRDPSASPPSWHSPSVVDVLFKRAENDAMVQEGRRSVGVERRKGGRRLSGTSPPLASIGTSRVVQGEGSVGNDRVPANSERSSRSGVGNGRRVAREESGRKSDRPDYFDVSQERQFSQAGKSLAEDVISRHSESKERKSKQRVKNFHAKTLSVQLNDVLLESDDLASSNMHFQRRFPRQEKIIEEAETSMCGHGSGLNRGKRRKFRNTRRTRVATGSRDIGAENELSVASNSLAQGSAHQKYEKEEDDNNVDQNVTRAPKNGCGIPWNWSRIHHRGKSFLDLAGRSFTSCGLSDPKLKKGELTADGRNIPEMPVASEYSSSSTKSDGESLPLLFEGSRSHGSTENACRDHDYSGELALFGNNLFKHDIDSDLASEARSGDQHKLRGNGHSRHQSLTQKYMPRTFSDMVGQNLVAQALSNAVIRRKVGLLYVFYGPHGTGKTSCARIFARALNCNSSEHLKPCGFCDYCVAHDMGKSRNIREVGPVSNFDFESIIDLLNNMVVSKLYSQYRVFIFDDCDTLSPDCWNAISKVIDRGPRRLVFILVSSSLDVLPHIITSRCQKFFFPKLKDTDIIYTLQWIATKEGLEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMPQLATVITDILAGTYDFTIERRRRKFFKRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYLLPTSSDNSFNHTPLALNNAHVQQASRITGNPVEIHGKARRLSMDDRIENFHAESSTNGVTKGVNSEKIRHSVSGVAPQHLYSRTTDNSRMHERQILGKNRKAIEEIWLEVLERIQISGLKEFLYKEGKLIFVSFGAAPTVQLMFSSQLTKSTAEKFTGHILQAFESVIGSSITIEIRCETNKYACAVQQPLILPGINNCSSQIRDSNGDAIQDHPSLTDSVDKRKGEIVEEAASPVQHRNDEHQIDAHTASYRSPGGTGIGLASVSQKEPIVKSHLDRRKLCEQGQSRSLVRSKISLAHVIQNAEGRRNVWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASKATRRKLSRLKIRSRKPYALLKLVSCGKCMSTKSPR 1188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0402 1188 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 178 1155 - -
Lal3g0402 1188 SMART AAA_5 487 628 IPR003593 -
Lal3g0402 1188 MobiDBLite consensus disorder prediction 151 171 - -
Lal3g0402 1188 MobiDBLite consensus disorder prediction 254 320 - -
Lal3g0402 1188 CDD AAA 469 628 - -
Lal3g0402 1188 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 454 678 IPR027417 -
Lal3g0402 1188 MobiDBLite consensus disorder prediction 375 389 - -
Lal3g0402 1188 Coils Coil 764 791 - -
Lal3g0402 1188 MobiDBLite consensus disorder prediction 258 272 - -
Lal3g0402 1188 Gene3D - 629 691 - -
Lal3g0402 1188 MobiDBLite consensus disorder prediction 92 204 - -
Lal3g0402 1188 MobiDBLite consensus disorder prediction 92 108 - -
Lal3g0402 1188 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 454 802 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Lal3g0402 1188 MobiDBLite consensus disorder prediction 358 406 - -
Lal3g0402 1188 MobiDBLite consensus disorder prediction 187 201 - -
Lal3g0402 1188 PANTHER PROTEIN STICHEL-LIKE 3 178 1155 - -
Lal3g0402 1188 MobiDBLite consensus disorder prediction 300 314 - -
Lal3g0402 1188 CDD HLD_clamp_pol_III_gamma_tau 628 691 IPR045085 -
Lal3g0402 1188 Pfam DNA polymerase III, delta subunit 471 628 - -
Lal3g0402 1188 Gene3D - 446 625 IPR027417 -
Lal3g0402 1188 SUPERFAMILY post-AAA+ oligomerization domain-like 699 802 IPR008921 GO:0003677|GO:0006260
Lal3g0402 1188 MobiDBLite consensus disorder prediction 114 128 - -
Lal3g0402 1188 MobiDBLite consensus disorder prediction 285 299 - -
Lal3g0402 1188 MobiDBLite consensus disorder prediction 436 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0402 Lal-Chr3 2778188 2784354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0402 454 740 Core DNA Replication Machinery Family AT1G21690 23.611 6.34e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0402 - - gmx:100809005 1852.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0402 3 2778188 2784354 Lal3g0402 3 2778188 2784354 ECH
Lal5g1318 5 15835591 15841358 Lal3g0402 3 2778188 2784354 LSH