Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0401 ATGGCTTCAGGGGCTATATTCTCGTCTCTGCGGCGGAGAAGATCGCCGACGTTGGAAGCGTTTCTTGCGCCGGTTGACTTTACCGATGATGCTCTTGTTCAAACCCTAGTTTCTGTGGTTAATGAATTGGTATCTTGCTTCTCAAGTCATATGTTCTATTTCCAGCGCAAGAACTCGCGGTCTTTGATCCGAAAAGTTGAGGTTTTTCAGTTGCTTTTGGAGTATCTGAGTGATTCTAGTGTTTTTCTTCCACCTACCGCCGTTCTTTGTCTCAAGGAGCTTTATCTTATGCTCTATCGGTCAAAGATTCTTCTTGATTATTGCGCGCAATCGAGTAAGTTGTGGCTTTTGCTCCAGAACCATTCAGTTTCTGGCCATTTCCATGATTTGAACCAAGAAATTTCGACCCTTTTGGATGTTTTTCCTATTAAGGATGTTGAATTGAGTAAGGATGTTAGGGAACAGTTTGAATTGTTGCAGAAACAGTCAAGGAAGGCTAGGTTACTTGTAGATATGAAAGATGAAGTTCTCAGAATTCGGTTCTTTTCGTTTCTTGATGAGTTTGAATGTGGGAAGATTCCTGATTCAGCTAAATTAAAAAGTTTTTGTGTTGAGAAATTGCAGATTTTGGATGCTAGGACTTGTAGGACTGAAATTGAGGCTTTAGAGGAACAGATTGTTAATCATGAGGGAGACATTGAGCCTACAATTTCTGTGCTTAATGGGTTGGTGGCGATGACACGGTACTGCAGGTTTTTGCTTTTCGGATTTGATGAAGATGAACTTCATTTGGAGAATGAAAGTCAGAAGATCAAAAAGAGATTGATTACCAAGGAAATTGCTGAAACATTTTTAACTGTTCCAAAGGACTTTTGTTGCCCTATAACATTGGATTTGATGCGTGACCCAGTGATAATTTCCACAGGTCAAACATATGACAGGAGTTCTATTTCCAGGTGGTTGGAAGAAGGGCATACAACTTGCCCAAAAACAGGGCAAATGCTTGGTCATACTCGCCTTGTTCCTAATCGTGCTCTAAGGAATTTGGTTTTGCAGTGGTGCATCGCACATGGAATTCCCCTTGACCCACCAGAGGTAATCGATGCTATGACTGAGACTTATGCATCAGCTTGTCCCACCAAAGCTGCCATTGAAGCCAACAAAGCCACAACAGCCCTTCTCATTCATCAGCTAGCTAATGGATCACAAGCTGGGCAGACTATAGCTGCTCGGGAGATACGATTTCTGGCAAAAACTGGAAAGCAAAACCGTGCTTTAATTGCAGAAGCAGGGGCAATCCCTTATCTTCGGAACTTGCTTTTGTCTCCTAATCATGTTGCTCAGGAGAATTCTGTGACTGCATTGCTCAACCTATCCATATTTGACAAAAATAAAAGTCGGATCATGGACGAGGAAGGGTGTCTGCAGTCAATCGTTGATGTGTTGAGATTCGGACACACAACAGAGGCAAGGGAAAATGCTGCTGCAACATTGTTCAGCCTATCTGCGGTCCATGACTATAAAAAGAGAATTGCTGATAAGATGGGAGCAGTTGAAGCCCTGGCAGGGTTGTTGCAAGAGGGGACTAACAGAGGAAAGAAGGACGCTGTAACAGCTTTATTTAATCTTTCTACCCACACCGAGAATTGTGTTAGAATGATAGAGGCTGGTGCGGTAACAGCTCTAGTTGGGGCTTTGGGGAATGAAGTTGTTGCTGAGGAAGCAGCTGGTGCCTTGGCCTTGATTGTTCGGCAACCTGTTGGGGCCACAGCAGTGGTGAAGGACGAAGCAGCAGTAGTTGGCTTGATGCGAATGATGCGTCGTGGAACTGCAAGAGGCAAAGAGAATGCAGTTGCAGCATTGCTGGAGTTGTGCCGGAGTGGAGGTGCAGTGGCAACTGAAAGGGTGGTTAAGGCACCAGCTTTGGCTGGATTACTTCAAACCCTTCTTTTTACAGGGACAAAGCGTGCAAGACGAAAAGCAGCTTCACTTGCTAGAGTGTTTCAGAGATGTGAAAATTCATCTCTACAATATAGTGGATTAGGTGTAGGCTATGCATTTGCTAGCAATTCAGCTCCACCTAGGGATACAAGCTTTACTGGTGATGTTTCAGTACCAATGTCCATTTCTGTTCATGTTTTATAG 2145 0.4378 MASGAIFSSLRRRRSPTLEAFLAPVDFTDDALVQTLVSVVNELVSCFSSHMFYFQRKNSRSLIRKVEVFQLLLEYLSDSSVFLPPTAVLCLKELYLMLYRSKILLDYCAQSSKLWLLLQNHSVSGHFHDLNQEISTLLDVFPIKDVELSKDVREQFELLQKQSRKARLLVDMKDEVLRIRFFSFLDEFECGKIPDSAKLKSFCVEKLQILDARTCRTEIEALEEQIVNHEGDIEPTISVLNGLVAMTRYCRFLLFGFDEDELHLENESQKIKKRLITKEIAETFLTVPKDFCCPITLDLMRDPVIISTGQTYDRSSISRWLEEGHTTCPKTGQMLGHTRLVPNRALRNLVLQWCIAHGIPLDPPEVIDAMTETYASACPTKAAIEANKATTALLIHQLANGSQAGQTIAAREIRFLAKTGKQNRALIAEAGAIPYLRNLLLSPNHVAQENSVTALLNLSIFDKNKSRIMDEEGCLQSIVDVLRFGHTTEARENAAATLFSLSAVHDYKKRIADKMGAVEALAGLLQEGTNRGKKDAVTALFNLSTHTENCVRMIEAGAVTALVGALGNEVVAEEAAGALALIVRQPVGATAVVKDEAAVVGLMRMMRRGTARGKENAVAALLELCRSGGAVATERVVKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENSSLQYSGLGVGYAFASNSAPPRDTSFTGDVSVPMSISVHVL 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0401 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 516 558 IPR000225 GO:0005515
Lal3g0401 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 431 473 IPR000225 GO:0005515
Lal3g0401 714 SUPERFAMILY RING/U-box 276 360 - -
Lal3g0401 714 CDD RING-Ubox_PUB 291 333 IPR045210 -
Lal3g0401 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 360 IPR013083 -
Lal3g0401 714 SMART arm_5 462 503 IPR000225 GO:0005515
Lal3g0401 714 SMART arm_5 546 584 IPR000225 GO:0005515
Lal3g0401 714 SMART arm_5 505 545 IPR000225 GO:0005515
Lal3g0401 714 SMART arm_5 420 460 IPR000225 GO:0005515
Lal3g0401 714 Coils Coil 212 232 - -
Lal3g0401 714 PANTHER U BOX DOMAIN-CONTAINING 12 695 - -
Lal3g0401 714 Gene3D - 366 683 IPR011989 -
Lal3g0401 714 Pfam U-box domain 287 357 IPR003613 GO:0004842|GO:0016567
Lal3g0401 714 Pfam Armadillo/beta-catenin-like repeat 422 459 IPR000225 GO:0005515
Lal3g0401 714 ProSiteProfiles U-box domain profile. 286 360 IPR003613 GO:0004842|GO:0016567
Lal3g0401 714 SMART Ubox_2 290 353 IPR003613 GO:0004842|GO:0016567
Lal3g0401 714 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 12 695 - -
Lal3g0401 714 SUPERFAMILY ARM repeat 393 669 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0401 Lal-Chr3 2771052 2774243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0401 1 713 U-box Gene Family AT1G29340 68.399 0.0 923
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0401 - - gmx:100811153 1153.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0401 3 2771052 2774243 Lal3g0401 3 2771052 2774243 ECH
Lal5g1319 5 15847514 15849661 Lal3g0401 3 2771052 2774243 LSH
Lal14g1225 14 14148317 14150473 Lal3g0401 3 2771052 2774243 PCT
Lal3g0401 3 2771052 2774243 Lal14g1225 14 14148317 14150473 PCT