Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0400 ATGGCTAGAAAGAAGGTGAAAATTGCATACATTGCCAATGATGCAAAGAGGAAAGCTACCTATAAGACAAGAAAAAATGGTCTGATAAAAAAGACTAAGGAGATTAGCACCCTTTGTGGCGTTGAAGCTTGTGCTATAATATATTATCCCAATGAACCTCTACCAGAGGTTTGGCCATCTCATTTTGATGTCCAAAGAGTTCTATACAAGTTCATGACAACGCCTCCGCTTGAACAAAGCAAAAAGATGTTTAACCAAGAAAGTTTTCTGATGCAAAGACTCACGAAGGCTCGGGAGCAGCTGAAGAAAAAGAAGAGTGAGAATTGGAAGGAAGAGATGTCCCTTCTCATGTTCAAATGCCTAAGTTATAGTGGGAGTGTTGCTGAGAATGTTAATGTGAAAAATGCCAATGATCTCTTATGGGTGATTGATCAAAATTTGAAGGATGTTGATCAAAAAATCAAAAGAGATCAATCCCATGAGGAGACACTAGTGGCTTCAAATAGTGCATTTGGTTTGAACGGAGAGATGGACCCTATTGATCGTAATGTCCAAGAGATGATGCAGACCAACGCCAATAGTGGTGCGAATGAGATGGTTCCATTTGGATGCTTCAATATCTCTAATGGATTTTCACATGGTCCTTTTGTCCATTGA 657 0.3942 MARKKVKIAYIANDAKRKATYKTRKNGLIKKTKEISTLCGVEACAIIYYPNEPLPEVWPSHFDVQRVLYKFMTTPPLEQSKKMFNQESFLMQRLTKAREQLKKKKSENWKEEMSLLMFKCLSYSGSVAENVNVKNANDLLWVIDQNLKDVDQKIKRDQSHEETLVASNSAFGLNGEMDPIDRNVQEMMQTNANSGANEMVPFGCFNISNGFSHGPFVH 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0400 218 Coils Coil 87 107 - -
Lal3g0400 218 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 170 - -
Lal3g0400 218 SUPERFAMILY SRF-like 1 84 IPR036879 GO:0003677|GO:0046983
Lal3g0400 218 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal3g0400 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Lal3g0400 218 Gene3D - 13 116 IPR036879 GO:0003677|GO:0046983
Lal3g0400 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal3g0400 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal3g0400 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal3g0400 218 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Lal3g0400 218 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lal3g0400 218 PANTHER MADS BOX PROTEIN 2 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0400 Lal-Chr3 2764550 2765206 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0400 1 155 Type I MADS-box Gene Family AT5G48670 50.968 3.10e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal3g0400 SRF-TF 4.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0400 - - lang:109344568 283.878