Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0399 ATGGCTAGAAGGAATACAAAACTTGCATACATAGTCAATGATGCAAAAAGGAATGCTACATATAAGAAAAGGAAAAATAGTCTGATAAAGAAGACTAAGGAAATCAGCACCCTTTGTGGTGTTGAAACATGTGCAATAATATATAGCAGCAATGGACTACAACCAGAGGTTTGGCCATCACATTTTGAGGTCCAAAAAGTGCTCTACAAATTCCTGACAATGCCTCCTCTGGAACAAAGCAGAAAGATGTTTGATCAAGAAATTTTTTTGAAGCAAAGAATAATGAAAGCTCAAGACCAACTGAAGAAAAAGAAGATTCAGAATCGGAAGGAGATGATGTCCCTTCTCATGTTCAAATGCCTAAGTACTGGGAAGGTTGAAGAAAATGTTAATGCTCAAAACGCCAATGATCTCTTATGGGTGATTGATGAAAATTTGAAGGAGATTGATGAGAAAATCACTAGAGATCATTCGCAAGATGGAAAACCTATGGATGGTAATGTCCAAGGAATGATTCAGACCAATTTCAATAGTGGTGTGAATGAAATGGTTCCATTTGGAAACTTTAATCTCTCAAATGGCTTTTGGCATGGTCCTTCTATTAATTGA 609 0.3645 MARRNTKLAYIVNDAKRNATYKKRKNSLIKKTKEISTLCGVETCAIIYSSNGLQPEVWPSHFEVQKVLYKFLTMPPLEQSRKMFDQEIFLKQRIMKAQDQLKKKKIQNRKEMMSLLMFKCLSTGKVEENVNAQNANDLLWVIDENLKEIDEKITRDHSQDGKPMDGNVQGMIQTNFNSGVNEMVPFGNFNLSNGFWHGPSIN 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0399 202 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Lal3g0399 202 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal3g0399 202 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 165 - -
Lal3g0399 202 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Lal3g0399 202 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal3g0399 202 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal3g0399 202 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal3g0399 202 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 165 - -
Lal3g0399 202 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Lal3g0399 202 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lal3g0399 202 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0399 Lal-Chr3 2730799 2731407 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0399 1 153 Type I MADS-box Gene Family AT5G48670 48.052 3.37e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal3g0399 SRF-TF 7.8e-15 No_clan