Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0398 ATGGCTAGAAGGAATACCAAACTTGGATACATAGCCAATGATGCAAAGAGGAATGCGACATATAAGAAAAGGAAAAATAGTCTTATAAAGAAGACTATGGAGATCAGCACCCTTTGTGGTGTTGATGCTTGTGCCATTATATATAACCGCAATGGATTTCAGCCAGAGGTTTGGCCATCACATTTTGAGGTCCAGAAAGTGCTCTACAAGTTCTTGACAATGCCTCCTCTGGTACAAAGCAGAAAGATGTTTGATCAAGAAAGTTATTTGAAGCAAAGAATCATGAAAGCTCAAGATCAGCTGAAGAAAAAGGAGATTCAGAATCGAAAGGAAATGATGTCCCTTCTAATGTTCAAATGCATAAGTACTGGGAAGGTTGAAGGGAATGTTAGTATGCAAGATGCGAATGATCTCTTATGGATTATTGATCAAAATTTGAATGAGCTTGATCAGAAAATCACTAGAGATCAACCCCAAGTGGGAACAATTGTGGCTACAAATAGAGCTTGA 510 0.3824 MARRNTKLGYIANDAKRNATYKKRKNSLIKKTMEISTLCGVDACAIIYNRNGFQPEVWPSHFEVQKVLYKFLTMPPLVQSRKMFDQESYLKQRIMKAQDQLKKKEIQNRKEMMSLLMFKCISTGKVEGNVSMQDANDLLWIIDQNLNELDQKITRDQPQVGTIVATNRA 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0398 169 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Lal3g0398 169 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Lal3g0398 169 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal3g0398 169 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal3g0398 169 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal3g0398 169 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Lal3g0398 169 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal3g0398 169 PANTHER MADS BOX PROTEIN 3 157 - -
Lal3g0398 169 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lal3g0398 169 Gene3D - 13 114 IPR036879 GO:0003677|GO:0046983
Lal3g0398 169 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0398 Lal-Chr3 2724227 2724736 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0398 1 153 Type I MADS-box Gene Family AT5G48670 45.098 1.39e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal3g0398 SRF-TF 2.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0398 - - lang:109344568 284.263