Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0397 ATGGCTAGAAGGAATACTAAACATACATACATAGTCAATGATGCAAGGAGGAACGCTACATATAAGAAAAGGAAAAGTAGTATTATAAAGAAGACTATGGAGATCAGCACCCTTTGTGGTGTTGATGCATGTGCCATTATATATAACCGCAATGGACTTCAACCAGAGGTTTGGCCCTCTCATTTTGGGGTCCAAAGCGTGCTCTACAAGTTCTTGACGATTCATCCTCTAGAACAAAGCCGAAAGATGTTCGATCAACAAAGTTTTCTGAAGCAACGAATCATGAAAGCTCAAGACAAACTGAAGAAAAAGAAGGCTCAAAATCGAAAGGAGATGATGTCCCTTCTCATGGTCAAATGTCTTAGTACTGGGAAGGTTGAAGAGAATATTAATTTGAATGTTGCCAAAGATCTCTTATCTGTGATTGATCAAAATTTGAATAAGCTTGATCGGAAAATCACTAGAGATCAAGCCCAAGAGGGAACAATTCTGGTTTAA 498 0.3835 MARRNTKHTYIVNDARRNATYKKRKSSIIKKTMEISTLCGVDACAIIYNRNGLQPEVWPSHFGVQSVLYKFLTIHPLEQSRKMFDQQSFLKQRIMKAQDKLKKKKAQNRKEMMSLLMVKCLSTGKVEENINLNVAKDLLSVIDQNLNKLDRKITRDQAQEGTILV 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0397 165 Coils Coil 87 107 - -
Lal3g0397 165 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Lal3g0397 165 Gene3D - 13 117 IPR036879 GO:0003677|GO:0046983
Lal3g0397 165 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Lal3g0397 165 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal3g0397 165 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Lal3g0397 165 PANTHER MADS BOX PROTEIN 5 157 - -
Lal3g0397 165 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal3g0397 165 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal3g0397 165 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal3g0397 165 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 5 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0397 Lal-Chr3 2714975 2715472 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0397 1 153 Type I MADS-box Gene Family AT5G48670 44.805 2.76e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal3g0397 SRF-TF 7.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0397 - - lang:109344568 253.062