Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0396 ATGGCTAGAAGGAATACCAAACATACATATATAGTCAATGATGCAAAGAGGAATGTGACATATAAGAAAGGGAAAAGTAGTCTTATAAAGAAGACTATGGAGATCAGCACCCTTTGTGGTGTTGATGCTTGTGCTATTATATACAACCGCAATGGACTTGAACCAGAAGTTTGGCCCTCTCATTTTGGGGTTCAAGGTGTGCTCTACAAATTCTTGACATTGCATCCTCTGGAACAAAGCGGAAAGATGTTTGGTCAAGAAAGTTTCTTGAAGCAAAGAATCGTGAAAGCTCAGGACCAACTGAAGAAAAGGAAGATTCAGAACTGA 327 0.3945 MARRNTKHTYIVNDAKRNVTYKKGKSSLIKKTMEISTLCGVDACAIIYNRNGLEPEVWPSHFGVQGVLYKFLTLHPLEQSGKMFGQESFLKQRIVKAQDQLKKRKIQN 108
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0396 108 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Lal3g0396 108 Gene3D - 13 105 IPR036879 GO:0003677|GO:0046983
Lal3g0396 108 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Lal3g0396 108 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal3g0396 108 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal3g0396 108 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal3g0396 108 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal3g0396 108 PANTHER MADS BOX PROTEIN 5 108 - -
Lal3g0396 108 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Lal3g0396 108 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 5 108 - -
Lal3g0396 108 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lal3g0396 Lal-Chr3 2711588 2711914 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0396 1 105 Type I MADS-box Gene Family AT5G48670 51.429 1.51e-27 100
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal3g0396 SRF-TF 4.4e-13 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0396 - - lang:109344568 174.866