Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0395 ATGGCTAGAAGGAATACCAAACATACATACATAGTCAATGATGCAAAGAGGAATACGACATATAAGAAAAGGAAAAGTAGTCTTATAAAGAAGACTATGGAGATCAGCACCCTTTGTGGTGTCGATGCTTGTGCCATTATATACAACCGCAATGGACTTCAACCAGAGGTTTGGCCCTCTCATTTTGGGGTTCAAAGCGTGCTCTACAAGTTCTTGACATTGCATCCTCTGGAACAAAGCAGAAAGATGTTTGGTCAAGAAAGTTTCTTGAAGCAAAGAATCGTGAAAGCTCAGGACCAACTGAAGAAAAAGAAGATTCAGAACCGAAAGGAGATGATGTCTCTTCTCATGGTCAAATACCTAGGTACTGGGCAGGTTGAAGAGAATATTAATATGAATATTGCGCAAGATCTCTTATATATGGTTGATCAAAATTTGAATGAGCTATATCGGAAAATCACTAGAGATCAACCCCAAGAGAGGACAATTATGGCTACATATATAGCTTGA 510 0.3882 MARRNTKHTYIVNDAKRNTTYKKRKSSLIKKTMEISTLCGVDACAIIYNRNGLQPEVWPSHFGVQSVLYKFLTLHPLEQSRKMFGQESFLKQRIVKAQDQLKKKKIQNRKEMMSLLMVKYLGTGQVEENINMNIAQDLLYMVDQNLNELYRKITRDQPQERTIMATYIA 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0395 169 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Lal3g0395 169 PANTHER MADS BOX PROTEIN 5 161 - -
Lal3g0395 169 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 5 161 - -
Lal3g0395 169 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Lal3g0395 169 Gene3D - 13 115 IPR036879 GO:0003677|GO:0046983
Lal3g0395 169 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Lal3g0395 169 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal3g0395 169 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lal3g0395 169 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal3g0395 169 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal3g0395 169 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0395 Lal-Chr3 2705200 2705709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0395 1 153 Type I MADS-box Gene Family AT5G48670 45.455 6.81e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal3g0395 SRF-TF 1e-14 No_clan