Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0390 ATGGCTCATAATTCACCACTCAATGGAAACAATGACAACGTGGTTGTCACTGTTCCTATCTGGAAGAAGTTTTTAGCAGAAGTGTTGGGCACATACTTCATGATATTTGCAGGATGTGGTGCTGTGGTGGTAAACCTTGATAACGAGAATGTGGTAACACATCCTGGGATTTCACTTGTTTGGGGACTTGTTGTTATGGTTTTGGCTTACACTCTTGCTCATATCTCTGGTGCTCATTTCAACCCTGCTGTTACCATTGCTCATGCTTCCATCAAAAGATTTCCTTTGAAGGAGGTACCAGCTTATATTGTAGCTCAAATGATTGGGTCGTTACTTGCAAGTGGAACACTTAGACTTTTATTTAATGGTAGGAAAAACCAGTTTATAGGTACACTTCCAAGTGGGTCTGATTTGCAAGCTTTTGTGGTTGAATTCATAATCACTTTCTACCTCATGTTTGTTATTTCTGGTGTTGCAACTGATAACAGAGCGATTGGTGAGTTGGCTGGACTTGCAGTTGGCTCAACAGTATGTCTGAATGTGATGTTTGTCGGGCCAATCACTGGAGCATCAATGAACCCAGCAAGAAGCTTAGGCCCTGCCATTATACACAATGAATACAGAGGAATATGGATTTATATAGTGGCACCATTTTTGGGAGCTGTGGCAGGAACATGGGTCTACCATTTCATTAGGCACACCAACAAGCCAGTGCGTGAGATCACAGAAAGTGCCTCTTTCCTTAAAGGACAACGTGGAGCACAGTGA 768 0.4245 MAHNSPLNGNNDNVVVTVPIWKKFLAEVLGTYFMIFAGCGAVVVNLDNENVVTHPGISLVWGLVVMVLAYTLAHISGAHFNPAVTIAHASIKRFPLKEVPAYIVAQMIGSLLASGTLRLLFNGRKNQFIGTLPSGSDLQAFVVEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVCLNVMFVGPITGASMNPARSLGPAIIHNEYRGIWIYIVAPFLGAVAGTWVYHFIRHTNKPVREITESASFLKGQRGAQ 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0390 255 CDD MIP 22 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal3g0390 255 PANTHER AQUAPORIN NIP2-1 12 251 IPR034294 -
Lal3g0390 255 Pfam Major intrinsic protein 17 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal3g0390 255 ProSitePatterns MIP family signature. 79 87 IPR022357 -
Lal3g0390 255 PRINTS Major intrinsic protein family signature 22 41 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal3g0390 255 PRINTS Major intrinsic protein family signature 61 85 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal3g0390 255 PRINTS Major intrinsic protein family signature 98 117 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal3g0390 255 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal3g0390 255 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal3g0390 255 PRINTS Major intrinsic protein family signature 211 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal3g0390 255 SUPERFAMILY Aquaporin-like 16 240 IPR023271 -
Lal3g0390 255 TIGRFAM MIP: MIP family channel proteins 26 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal3g0390 255 Gene3D Glycerol uptake facilitator protein. 8 243 IPR023271 -
Lal3g0390 255 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 12 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0390 Lal-Chr3 2672486 2675381 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0390 18 249 Major Intrinsic Protein MIP AT5G37820 61.638 1.27e-100 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0390 K09874 - gmx:100812577 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0390 3 2672486 2675381 Lal3g0390 3 2672486 2675381 ECH
Lal3g0390 3 2672486 2675381 Lal11g0541 11 4328348 4333484 LSH