Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0387 ATGACAAGCAATGAAGAAAATAAAGCCATAGGCATTGACCTAGGCACAACCAAAACCTGTGTGGCTGTGTGGCAACACAACCGTGTTGAGATAATCCCAAATGACCAAGGCAACCGCACCACCCCTTCTATAGTCTCTTTCACCGATGCCCAAAGGTTAGTTGGTGATGAAGCCAGAAACCAAGTAACCATGAATCCACACAACACCATTTTCAACGTGAAACGTTTCATTGGTCTTCGGTTTCAAGACCAATCAGTTCAAGAAGACATGAAGCTGTGGCCATTTAAGGTTGTCCCTGCTGGACCCAACAAAGAGAAGCCAATGATTGTTGTAACTTATAAAGGTGAAGAGAAACAAATTTCAGGTGAAGAGATATCTTCTATGGTACTGTGGGTCATTGCAGGCTTCAATGTGTTGAGAATCATCAACGAGCCCACTGCAGCTGCTATTGCTTACGGGTTAGACAAGAAAAGTTGCAGAAAAGGTGAACAAAACGTGTTCGTGTTTGATCTTGGTGGTGGTACTTTTGATGTTTCCTTGGTTGCTATTGATAAAGGCATGTTTAGGGTTAAGGCCACGTTAGGAGATACCCATTTAGGTGGTTTAGACTTTGATAACAAAATGGTTCACCATTTTGTGAATGTATTTAACATGAAGCACAAGATAGATATTAGTGGAAATTCTAGAGCTCTTGGAAAGTTAAGGTCAGCTTGTGAGAAAGCTAAGAGGCTTCTTTCTTCAACTTCACAAACCATCATTGAGATTGATTCTTTAGCTGGAGATATTGATCTACATGCTCTTGTTACAAGAGCTGCTTTTGAGGAGTTGAATAAAGATTTGTTTGCAAAGTGTATGGAGATTGTGGAAAAGTGTTTGGTTGAGGCCAAGATTCATAAAAGCCAAGTGCATGAATATGTTCTTGTTGGTGGATCAACTAGAATTCCAAAAGTTCAGCAACTTTTGAAGGACTTTTTCAATGTCAATGGCAAAGAACTTTGCAAGAGCATCAACCCTGATGAAGCTGTGGCTTATGGTGCAGCTGTGCAGGCTGCTATTTTGAGTGGTGAAGGAGACAAGAAATTGGATGATTTGTTATTGCTTGATATAATGCCATTTAGTGTTGGTGTTGAGAATGATAGTGGTTTCATGTCTGTGGTGATTCCTAAGAATAAAACTATTCCAACAAAGAAGGAGAAGGTTTTTTCTACCAGCACTGATAACCAGTCTAGTGTGTTGGTGAAGGTATATGAAGGAGATCAAGCTAGGGTAAAGGATAACATCTTTCTTGGAAAGTTTAAGCTCTCTGGCTTCCCCTTGGCACCAAGGGGAGTCCCACAAATCAATGTTAGTTTCGATATCGATGTTGACGGTATTCTTGAGGTAAGTGCAGAAGATAAGACTAAGAAATCGAAGTTGAAGATTACTATCACTAACAAGAAGGGGAGGTTGAGGCCGGGAGAGATTAGAAGAATGGTGAGAGATGGAGAGATGCATAAGAAAGAGGATGAGGAGTTTAGGAAGAAGGTTAATGCAAAGAACTTGCTTGAGAAATATGCTTATGAAATGAGGGGCAAGTTAAAGAAGCTTGGTGAGAAAGTGGAGGAAACCATAGAATGGATTGATAGAAACCAGTTGGCTGAAGCTGATGAGTTTGAGTACAAGAAGCAGGAGCTTGAAAGGGATCTGCAGCTT 1692 0.4066 MTSNEENKAIGIDLGTTKTCVAVWQHNRVEIIPNDQGNRTTPSIVSFTDAQRLVGDEARNQVTMNPHNTIFNVKRFIGLRFQDQSVQEDMKLWPFKVVPAGPNKEKPMIVVTYKGEEKQISGEEISSMVLWVIAGFNVLRIINEPTAAAIAYGLDKKSCRKGEQNVFVFDLGGGTFDVSLVAIDKGMFRVKATLGDTHLGGLDFDNKMVHHFVNVFNMKHKIDISGNSRALGKLRSACEKAKRLLSSTSQTIIEIDSLAGDIDLHALVTRAAFEELNKDLFAKCMEIVEKCLVEAKIHKSQVHEYVLVGGSTRIPKVQQLLKDFFNVNGKELCKSINPDEAVAYGAAVQAAILSGEGDKKLDDLLLLDIMPFSVGVENDSGFMSVVIPKNKTIPTKKEKVFSTSTDNQSSVLVKVYEGDQARVKDNIFLGKFKLSGFPLAPRGVPQINVSFDIDVDGILEVSAEDKTKKSKLKITITNKKGRLRPGEIRRMVRDGEMHKKEDEEFRKKVNAKNLLEKYAYEMRGKLKKLGEKVEETIEWIDRNQLAEADEFEYKKQELERDLQL 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0387 564 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 37C-RELATED 1 130 - -
Lal3g0387 564 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 37C-RELATED 132 559 - -
Lal3g0387 564 SUPERFAMILY Actin-like ATPase domain 8 156 IPR043129 -
Lal3g0387 564 PANTHER HEAT SHOCK PROTEIN 70KDA 1 130 IPR013126 GO:0005524|GO:0140662
Lal3g0387 564 PANTHER HEAT SHOCK PROTEIN 70KDA 132 559 IPR013126 GO:0005524|GO:0140662
Lal3g0387 564 Gene3D - 133 350 - -
Lal3g0387 564 Gene3D - 513 563 IPR029048 -
Lal3g0387 564 SUPERFAMILY Actin-like ATPase domain 161 355 IPR043129 -
Lal3g0387 564 ProSitePatterns Heat shock hsp70 proteins family signature 2. 168 181 IPR018181 -
Lal3g0387 564 ProSitePatterns Heat shock hsp70 proteins family signature 3. 305 319 IPR018181 -
Lal3g0387 564 Pfam Hsp70 protein 133 558 IPR013126 GO:0005524|GO:0140662
Lal3g0387 564 Pfam Hsp70 protein 9 130 IPR013126 GO:0005524|GO:0140662
Lal3g0387 564 Gene3D - 157 333 - -
Lal3g0387 564 Gene3D Actin; Chain A, domain 4 200 283 - -
Lal3g0387 564 Gene3D - 1 132 - -
Lal3g0387 564 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 511 560 IPR029048 -
Lal3g0387 564 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 360 516 IPR029047 -
Lal3g0387 564 PRINTS 70kDa heat shock protein signature 8 21 - -
Lal3g0387 564 PRINTS 70kDa heat shock protein signature 36 48 - -
Lal3g0387 564 PRINTS 70kDa heat shock protein signature 58 66 - -
Lal3g0387 564 PRINTS 70kDa heat shock protein signature 174 184 - -
Lal3g0387 564 PRINTS 70kDa heat shock protein signature 302 318 - -
Lal3g0387 564 PRINTS 70kDa heat shock protein signature 336 356 - -
Lal3g0387 564 PRINTS 70kDa heat shock protein signature 363 382 - -
Lal3g0387 564 PRINTS 70kDa heat shock protein signature 444 460 - -
Lal3g0387 564 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 359 512 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0387 Lal-Chr3 2661714 2664198 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0387 1 559 Calmodulin-binding Proteins AT3G12580 63.115 0.0 757
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0387 K03283 - gmx:100795699 748.043