Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0386 ATGGAATCGAAAACCCCTGCGAGATTTACGTTAGGGAAGCAATCATCTTTGGCTCCGGAGCGCCATGGTGAAGAATCAGGGTCCCACAAAGATGGTGAAAGCGTGGAAGGTGTTGATTCGGGAGTGAGGTTAATGTATTCTGCAAATGAAGGAGATCTTGATGGTATACGTGAGGTTTTAGAATCTGGCGTTAGTGTGAATTTCAGGGATATTGATTATCGCACGCCCCTTCATATTGCTGCGTGTCAGGGTTTAACTGATGTTGTTGCTTTGTTGCTCGAGAAAGGTGCTGATGTTGACCCTAAAGATCGATGGGGTAGCACGCCACTTGCAGATGCTATATACTATAAAAAGAACGATGTGATCAAACTATTGGAGAAGCATGGAGCAAAGCCTCGGATGGCCCCTATGCACGTAAACCATGCACGTGAAGTCCCAGAATATGAAATCAACCCTACAGAGCTTGATTTCACCAACAGTGTGGAGATCACAAAGGGAACTTTCTGTAGCGCATTCTGGCGTGGGACAGAGGTTGCAGTAAAAAAGCTTAAGGAGAATGTGCTTACTGATGAGGAGAGAGTGAAATCCTTTAGAGATGAGCTTGCTCTGTTCCAGAAGATTCGACATCCAAATGTAGTCCAATTTCTGGGTGCTGTGACCCAGAGTAGTCCAATGATGATTGTGACAGAATATCTTCCCAAGGGAGATCTTCGTGCTTTCTTGAAAAGAAAAGGAGCTCTGAAACCATACACAGCAGTGAGATTTGCACTTGATATTGCTAGGGGTGTTGGTTATTTGCATGAAAATAAGCCATCACCAATTATTCACCGTGATCTTGAGCCTTCTAATATACTGCGCGATGATACCGGGCACCTAAAAGTTGCAGATCTTGGGGTTAGCAAGTTGCTAGCAGTTAAAGAAGACAGACCTCTAACTTGCCAAGATACTTCTTGCCGCTATGTGGCTCCCGAGGTTTTCAAACAAGAAGAATATGACACCAAAGTGGATGTTTTCTCCTTTGCGCTAATTCTGCAAGAGATGATTGAAGGCTGCCCACCATTTTCTGCAAAGAAAGATGAGGAGGTTCCTAAGGCATATGCTGCAAAGGAGCGTCCACCTTTTCGAGCTCCATCCAAGCGATATGCCCATGGACTTAAAGAATTGATCGAAGAGTGCTGGAATGAGAATCCAGAGAAGAGACCAACATTTAGGCAAATCATAACTAGGCTGGAATCCATCAACAACACTATTGGTTACAGAAGACGTTGGAAGGTTAGATCATTCAAATGCTTCCAGAATCTGGAAGCCTTTTTAAAGAGGGATCATTCGAATCTAAGCAGTCGTGGCAGCTCATCTCGCTCTGCCTCCAGCCGTATATGA 1380 0.4449 MESKTPARFTLGKQSSLAPERHGEESGSHKDGESVEGVDSGVRLMYSANEGDLDGIREVLESGVSVNFRDIDYRTPLHIAACQGLTDVVALLLEKGADVDPKDRWGSTPLADAIYYKKNDVIKLLEKHGAKPRMAPMHVNHAREVPEYEINPTELDFTNSVEITKGTFCSAFWRGTEVAVKKLKENVLTDEERVKSFRDELALFQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLRAFLKRKGALKPYTAVRFALDIARGVGYLHENKPSPIIHRDLEPSNILRDDTGHLKVADLGVSKLLAVKEDRPLTCQDTSCRYVAPEVFKQEEYDTKVDVFSFALILQEMIEGCPPFSAKKDEEVPKAYAAKERPPFRAPSKRYAHGLKELIEECWNENPEKRPTFRQIITRLESINNTIGYRRRWKVRSFKCFQNLEAFLKRDHSNLSSRGSSSRSASSRI 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0386 459 PRINTS Tyrosine kinase catalytic domain signature 229 242 IPR001245 GO:0004672|GO:0006468
Lal3g0386 459 PRINTS Tyrosine kinase catalytic domain signature 268 286 IPR001245 GO:0004672|GO:0006468
Lal3g0386 459 PRINTS Tyrosine kinase catalytic domain signature 381 403 IPR001245 GO:0004672|GO:0006468
Lal3g0386 459 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 441 - -
Lal3g0386 459 ProSiteProfiles Ankyrin repeat profile. 72 104 IPR002110 GO:0005515
Lal3g0386 459 CDD STKc_MAP3K-like 163 410 - -
Lal3g0386 459 Pfam Protein tyrosine and serine/threonine kinase 172 410 IPR001245 GO:0004672|GO:0006468
Lal3g0386 459 SUPERFAMILY Ankyrin repeat 43 135 IPR036770 -
Lal3g0386 459 MobiDBLite consensus disorder prediction 18 36 - -
Lal3g0386 459 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 9 441 - -
Lal3g0386 459 Gene3D - 12 148 IPR036770 -
Lal3g0386 459 PIRSF ILK 1 432 - -
Lal3g0386 459 SMART ANK_2a 39 68 IPR002110 GO:0005515
Lal3g0386 459 SMART ANK_2a 72 101 IPR002110 GO:0005515
Lal3g0386 459 SMART ANK_2a 105 134 IPR002110 GO:0005515
Lal3g0386 459 Gene3D Transferase(Phosphotransferase) domain 1 233 454 - -
Lal3g0386 459 ProSiteProfiles Protein kinase domain profile. 157 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0386 459 MobiDBLite consensus disorder prediction 1 36 - -
Lal3g0386 459 Coils Coil 180 200 - -
Lal3g0386 459 SUPERFAMILY Protein kinase-like (PK-like) 156 412 IPR011009 -
Lal3g0386 459 Pfam Ankyrin repeats (3 copies) 44 133 IPR002110 GO:0005515
Lal3g0386 459 ProSiteProfiles Ankyrin repeat region circular profile. 72 104 - -
Lal3g0386 459 Gene3D Phosphorylase Kinase; domain 1 149 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0386 Lal-Chr3 2646283 2658864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0386 8 431 MAP Kinase Kinase Kinase AT4G18950 69.718 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Lal3g0386 PK_Tyr_Ser-Thr 2.2e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0386 - - gmx:100790126 783.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0386 3 2646283 2658864 Lal3g0386 3 2646283 2658864 ECH
Lal5g1332 5 16004700 16013820 Lal3g0386 3 2646283 2658864 LSH