Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0385 ATTGATTTTATCTTTGATGATTTGATTCAGGTTGAAGCAATGGATTTCACAAATCAATCTATGTCAGATTCACCACAGAGAAAGATGGGAAGGGGGAAGATTGAGATCAAGAGGATTGAAAACACTACAAATCGCCAAGTAACTTTCTGCAAAAGAAGAAATGGTCTTCTCAAAAAGGCATATGAGTTATCTGTTCTGTGTGATGCTGAGGTTGCTCTTATAGTCTTCTCTAGCCGTGGCCGTCTCTATGAATATGCTAATAACAGTGTCAAAGCAACTATTGAGAGGTACAAGAAAGCATGTTCAGATTCATCTGGTGCTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTACCAGCAAGAAGCAGACAAACTTCGTGTGCAAATTAGTAACCTGCAAAATAACAACAGGCAATTGATGGGTGAGTCTTTGGGGTCTATGAATGCTAAGGACCTCAAAAATCTTGAGACTAAATTAGAGAAAGGAATTAGCAGGATCCGTTCAAAAAAGAATGAGCTACTATTTGCTGAAATTGAGTACATGCAGAAGAGGGAGATTGACTTGCACAATAACAATCAACTTCTTAGAGCAAAGATAGCTGAAAGTGAGAGGAACCAACATAACATGAATGTAATGCCTGGAGGGACAAGCTATGAATCTATGCAACAGACTCATCAGCAGCAATTTGATTCACGTGGCTACTTTCAAGTCACAGGATTACAACCTAATAATCACTATGCTCGCCAAGACCATATGTCACTGCAATTAGCGTAA 774 0.3928 IDFIFDDLIQVEAMDFTNQSMSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSGAGSASEANAQFYQQEADKLRVQISNLQNNNRQLMGESLGSMNAKDLKNLETKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERNQHNMNVMPGGTSYESMQQTHQQQFDSRGYFQVTGLQPNNHYARQDHMSLQLA 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0385 257 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 38 85 IPR002100 GO:0003677|GO:0046983
Lal3g0385 257 SUPERFAMILY SRF-like 30 101 IPR036879 GO:0003677|GO:0046983
Lal3g0385 257 Gene3D - 41 107 IPR036879 GO:0003677|GO:0046983
Lal3g0385 257 ProSiteProfiles K-box domain profile. 115 205 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal3g0385 257 PRINTS MADS domain signature 31 51 IPR002100 GO:0003677|GO:0046983
Lal3g0385 257 PRINTS MADS domain signature 51 66 IPR002100 GO:0003677|GO:0046983
Lal3g0385 257 PRINTS MADS domain signature 66 87 IPR002100 GO:0003677|GO:0046983
Lal3g0385 257 Pfam K-box region 113 199 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal3g0385 257 ProSitePatterns MADS-box domain signature. 31 85 IPR002100 GO:0003677|GO:0046983
Lal3g0385 257 ProSiteProfiles MADS-box domain profile. 29 89 IPR002100 GO:0003677|GO:0046983
Lal3g0385 257 CDD MADS_MEF2_like 30 99 IPR033896 GO:0000977|GO:0045944
Lal3g0385 257 Coils Coil 115 142 - -
Lal3g0385 257 Coils Coil 152 172 - -
Lal3g0385 257 SMART madsneu2 29 88 IPR002100 GO:0003677|GO:0046983
Lal3g0385 257 PANTHER AGAMOUSB 23 251 - -
Lal3g0385 257 PANTHER MADS BOX PROTEIN 23 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0385 Lal-Chr3 2623389 2629137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0385 11 257 MADS-box Gene Family AT3G58780 64.143 3.35e-110 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal3g0385 K-box 1.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0385 K09264 - gmx:732595 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0385 3 2623389 2629137 Lal3g0385 3 2623389 2629137 ECH
Lal5g1334 5 16027148 16031313 Lal3g0385 3 2623389 2629137 LSH
Lal14g1230 14 14189891 14197151 Lal3g0385 3 2623389 2629137 PCT
Lal3g0385 3 2623389 2629137 Lal14g1230 14 14189891 14197151 PCT