Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0371 ATGCTGCATACGAATGACTACGCACACAGTGTGTTTGTGAAAATGAGTGATAGCATTGGTTCTTCGTATCTTCAGAGAATGGCCACAGAACTCAACTGTCCCATTTGTTGGAGTTTGCTTGATTCTGCAGTTTCACTTACATGTAATCATGTATTCTGCAAATTGTGTATTCTCAAGTCGATGAAGTTGGCTTCTGATTGTCCTGTTTGTAAAGTACCTTTCACTCGTAGAGAGGTTCGCCCTGCTCCTCAAATGGACAACATGGTCAACATATACATGAGCATGGAGAATGCTTCAGGGATTAATGGAGAAAAGCTACATGAAGGTGATGCTGATATTGAAATGAAGGATGCCGGCGAAACTCATAAGAATTATGCACAAAAGAAAAAACTCATCAGAAAAAAGGAGTCAAAGAAAAAGATAATGTCATGCACAAAAGGTGTTGAAATTGCAAAACCATATTTTCCAGCAAAGAAAAGGATTCAAGTGCCACAGGACCCTCTTTCAGAAACTCCATTAATAGATTATAAGTTTGGAGACACTCTAAATGAAGTTAATAAAGAGGGAACAAAAGAGGGTTTGATCTTGGCAAATAAAAGGCCTCTCCAAAATGAAAAGGATGATCATGTTCTTTCACCTTTCTTTTGGTTAAGAGAAGAGGAAGATGGTGAAAAGATAAGTCAGGACTCTGATGGGGATCAACTCATTGATTGCGCAACACCAACTCCTCCTTCATTCAGTGATCTCAAGGACTCTGATGATGAAAGCCCCTTTAAAAAGGCTCCATCAGATGAGGCACAAAATAAAGCCTCTGTTATTTTATTTGATAGTGAGATGTTTGAGTGGACACAAAGGCCTTGCTCTCCTGAATTATTTTCAAGTCCTATTAAAATGCAGGTTGAGGATACTTGTGAGATTGATGAAAATCAAGTGAATTTTGTTGCATCGGCACAAGAGCTGGAAAAAAACTGGTCAAGTGCTGATGCTGACAACTCAAAATTTGAGAATTCCAAAGAAGGAAATGGATTGGATAACAAGTTACCACAAACTGTGGCTTCTCAGATTATAAGTTCTGATGATCAAAATGGGATAAAAAAGTCTACAAAGAGAGGTAGGAAGGCTAGGGGAAAGGCAAGGCAAGGGAAGACTGGGGAACAAAGAGATCCAGTTAATGGAATGGATGTTGGTTCCAATATATCATCAAAAGTCAACCTGGAGAAAGTGTTGGACCATAAGCATGATTGTTCTAATTTGGGGAAGACTAATAGAATGTCCAAGAGGGTTCCATTCATTTCCAGTACAAATCAAACTGCTTGTACACTCTCAAATATATTAGTTCCGAGTGGTGAGGTGGAGATGGCAAATAATTCACCATGTAAAGAAGAAATTGAGAAGAATGGTCCTCATGATATTGGTGAGAAAAGAAAGAGGAAAAGATCTGGAAAACGAAAGTCGAATTATGTGCAGGATCTACCTGAAGAATTATCTCCAGTGCAAAACAAAACCAATGAGTTTGCTGATTCTGTATCATCAGTTTTGACTCCTGAGATGGTTGATAATGGAAAGGCCTCTAATAACAGGCAAAACAAAAGCAACTCTACAAGCAATTCTATGTCTTGCAATAGAGAATTGAGGAGTGCCAAAAAGTTGAAACTTTCCTCTGATGGTATCATGGAGACTAAAAATGTTACAGAAATCCAACCTAATGCAAGTCGTCAACAAATTCCTCATGCTAAGGCTTTGAATGATACATCAAAAGAGATGCAATCTCCTTTGATGAATCAACCAGTTTTACAGAAATGTGAGAGTCATGTCAAAAAGTTTCAGTGTGTTTTCTGCTTCTCATCAGAAGAAACAGAGGATTCTGGACCAATGGTACATTACTATGACGGGAAGCCTGTAACTGCAGATTATGAAGGTGGATACAAAGTCACACATTCTCACAGGAATTGCACGGAATGGGCCCCCAATGTATATTTCATACATGATAATGCAATAAATCTTGAAGCTGAAATAAGCAGAAGTCGGAGAATTAAATGTTGTTTTTGTGGACTTAAGGGGGCTGCACTTGGTTGTTATGAGAAGAGTTGTCGGAAGAGCTTTCATGTTCCTTGTGCCAAGTTAACTTCTCAATGTCGATGGGATATGGAAAATTTTGTCATGTTATGCCCTCTGCATGCTTCTTCCAAGTTGCCCAGTGAAAGTTCAGGATCCCAAGAAAGGAGTAAAAAAAACACAGCTAGAGAGAGGAAAACCCTTGCTAGCAAACATGACAATACAGGTCAAAGTCAGACTGCTCATGGATCCTACAATAAAATAGTACTTTGTTGTTCTGCTCTATCAGTGCAAGAGAGGGGTGTTGTTTCTGAATTTGAAAGAGAATCCGGGGTTACAGTTTTGAAAAAATGGGATTCAAGTGTCACCCATGTAATAGCATCAGCAGATGAAAATGGGGCATGCAAAAGGACCCTCAAAGTATTGTTGGGTATTCTGGAGGGAAAGTGGGTTCTCAATATTGAGTGGATCAAAGCTTGCTTGAAGGAAATGGGACATGTTGATGAGGAGCATTACGAAATTAATGTGGACATCCATGGAATCAGGGGTGGTCCTCGTCTTGGACGACTAAGAGTATTAAACAAGCAACCAAAACTATTTTATGGCTACAGCTTCTATTTTATGGGAGATTTTGAACAGTCATACAAGGGCTATCTACAAGATCTCGTGATTGCTGCTGAAGGGACAATTCTGCATAGAAAACCAGTGTCTGGTTACCAAGAAGCACTATCACCTGATATGCATCCAAACCAAACCCTCATCATTTACAGCCTTGAGTTTCCTGATAATTTCAGTCCTTTGAGAAGGGATACAATTATAAAACAAAGGCAATGTGATTCAGAGGCCCTGGCAAGTTCTACAGGTTCAAAGGTTGCAAGCAATACATGGATTCTGAATTCTATTGCAGCCTGCAAGCTCCAAAGCCTTGCTCCATAA 2991 0.3942 MLHTNDYAHSVFVKMSDSIGSSYLQRMATELNCPICWSLLDSAVSLTCNHVFCKLCILKSMKLASDCPVCKVPFTRREVRPAPQMDNMVNIYMSMENASGINGEKLHEGDADIEMKDAGETHKNYAQKKKLIRKKESKKKIMSCTKGVEIAKPYFPAKKRIQVPQDPLSETPLIDYKFGDTLNEVNKEGTKEGLILANKRPLQNEKDDHVLSPFFWLREEEDGEKISQDSDGDQLIDCATPTPPSFSDLKDSDDESPFKKAPSDEAQNKASVILFDSEMFEWTQRPCSPELFSSPIKMQVEDTCEIDENQVNFVASAQELEKNWSSADADNSKFENSKEGNGLDNKLPQTVASQIISSDDQNGIKKSTKRGRKARGKARQGKTGEQRDPVNGMDVGSNISSKVNLEKVLDHKHDCSNLGKTNRMSKRVPFISSTNQTACTLSNILVPSGEVEMANNSPCKEEIEKNGPHDIGEKRKRKRSGKRKSNYVQDLPEELSPVQNKTNEFADSVSSVLTPEMVDNGKASNNRQNKSNSTSNSMSCNRELRSAKKLKLSSDGIMETKNVTEIQPNASRQQIPHAKALNDTSKEMQSPLMNQPVLQKCESHVKKFQCVFCFSSEETEDSGPMVHYYDGKPVTADYEGGYKVTHSHRNCTEWAPNVYFIHDNAINLEAEISRSRRIKCCFCGLKGAALGCYEKSCRKSFHVPCAKLTSQCRWDMENFVMLCPLHASSKLPSESSGSQERSKKNTARERKTLASKHDNTGQSQTAHGSYNKIVLCCSALSVQERGVVSEFERESGVTVLKKWDSSVTHVIASADENGACKRTLKVLLGILEGKWVLNIEWIKACLKEMGHVDEEHYEINVDIHGIRGGPRLGRLRVLNKQPKLFYGYSFYFMGDFEQSYKGYLQDLVIAAEGTILHRKPVSGYQEALSPDMHPNQTLIIYSLEFPDNFSPLRRDTIIKQRQCDSEALASSTGSKVASNTWILNSIAACKLQSLAP 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0371 996 ProSiteProfiles Zinc finger RING-type profile. 33 71 IPR001841 -
Lal3g0371 996 Pfam Zinc finger, C3HC4 type (RING finger) 32 70 - -
Lal3g0371 996 Pfam BRCA1 C Terminus (BRCT) domain 788 846 IPR001357 -
Lal3g0371 996 Gene3D BRCT domain 770 875 IPR036420 -
Lal3g0371 996 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 22 994 IPR031099 GO:0006281|GO:0006974
Lal3g0371 996 MobiDBLite consensus disorder prediction 248 262 - -
Lal3g0371 996 MobiDBLite consensus disorder prediction 492 543 - -
Lal3g0371 996 MobiDBLite consensus disorder prediction 457 474 - -
Lal3g0371 996 ProSiteProfiles Extended PHD (ePHD) domain profile. 607 727 IPR034732 -
Lal3g0371 996 SMART BRCT_7 766 849 IPR001357 -
Lal3g0371 996 SMART BRCT_7 882 989 IPR001357 -
Lal3g0371 996 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Lal3g0371 996 CDD BRCT_Bard1_rpt1 773 848 - -
Lal3g0371 996 ProSiteProfiles BRCT domain profile. 880 996 IPR001357 -
Lal3g0371 996 MobiDBLite consensus disorder prediction 326 340 - -
Lal3g0371 996 MobiDBLite consensus disorder prediction 729 765 - -
Lal3g0371 996 MobiDBLite consensus disorder prediction 741 756 - -
Lal3g0371 996 MobiDBLite consensus disorder prediction 358 396 - -
Lal3g0371 996 MobiDBLite consensus disorder prediction 324 346 - -
Lal3g0371 996 SUPERFAMILY BRCT domain 773 865 IPR036420 -
Lal3g0371 996 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN 22 994 - -
Lal3g0371 996 Gene3D BRCT domain 881 989 IPR036420 -
Lal3g0371 996 ProSiteProfiles BRCT domain profile. 784 859 IPR001357 -
Lal3g0371 996 Pfam PHD-like zinc-binding domain 648 726 - -
Lal3g0371 996 MobiDBLite consensus disorder prediction 453 549 - -
Lal3g0371 996 SUPERFAMILY RING/U-box 22 94 - -
Lal3g0371 996 SMART ring_2 33 70 IPR001841 -
Lal3g0371 996 SUPERFAMILY BRCT domain 884 994 IPR036420 -
Lal3g0371 996 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 102 IPR013083 -
Lal3g0371 996 MobiDBLite consensus disorder prediction 222 266 - -
Lal3g0371 996 SMART PHD_3 679 727 IPR001965 -
Lal3g0371 996 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 604 729 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0371 Lal-Chr3 2530028 2537935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0371 30 79 C3H Transcription Factor Family AT3G07200 36.000 1.58e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0371 K10683 - gmx:100804958 1186.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1355 5 16231419 16237815 Lal3g0371 3 2530028 2537935 LSH