Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0353 ATGTCACTTTCCTGTGCCAAAAACTTCTTCAAGAGGTTCTGTATAGATGAATTCCAAATAGGAAGTTATGCTCATAGTAGCTTTCTGTCCAACGATCTATTGCTATCTCTTGGTGCAAGAATTAACCAAGAAGCTACACTTGGAAGATATATAATCTCGCCTTTCAATCCGCGTTATAGGGCTTGGGAGATGTTACTGGTTGCTCTAGTTATATACTCAGCATGGATTTGCCCATTTGAGTTTGCCTTTTTGCCTTACAAGCCAAATGCATTATTCATCATAGACAACATTGTTAATGGTTTCTTTGCCATTGATATCATGCTCACATTCTTTGTAGCATATCTTGATAGCCATTCTTATCTTTTTGTTGATGATCCAAAGAGAATTTCAATCAGACTAGAGAAGGACATTAGTTTCGGTTACTTCTGGACTAGGTGTACAAAGCTCATTGCTGTAACACTATTTGCAGTACACTGTGCAGGATGCTTTAACTATCTAATCGCGGATAGGTACCCGGATCCTAAAAGAACATGGATAGGTGCATTGTACCCAAATTTTAAAGAAGTGAGTCTTTGGGACAGATATGTGACTGCAATGTACTGGTCCATTGTCACACTTACTACCACTGGCTATGGAGATTTACATGCTGAGAACACCAGGGAGATGCTATTTGGTATCTCTTACATGCTCTTCAATTTGGGTTTAACATCATACATTATTGGAAACATGACTAACCTTGTAGTCCACTGGACCAACCACACCAGAAATTTTAGAGGTTTGGTTTTGGTGCCACAGAGGGATACAATCAGAACAGCTTCTGAATTTGCTTCAAGAAATCAATTGCCCTGTCAAATACAGAATCAAATGTTGTCACACATATGTTTGAGGTTCAAAACAGAAGGATTGAAGCAACAAGAAACATTAAATGATCTTCCAAAGACGATTCGTTCAAGCATTACACACCATCTCTTTTTTCCTGTTGTGCAGAAAGTGTACCTCTTCCAAGGAGTCTCACATGACTTCCTTTTCCAACTGGTTTCAGAAATGGAAGCTGAGTATTTCCCACCCAAAGAAGATGTGATACTACAAAATGATTCTGCTACAGACCTTTATGTGCTGGTTTCAGGGGCAGTGGATATCGTTCAATACATTGATGGTCATGATCAAGTTCTTGGGAAGGTACATGCAGTTGATGTGTTCGGAGAGATTGGAGTTTTATATCATATACCACAGCCTTTCACATTTCAAACTAATGAGCTTTCTCAAATTTTAAGACTCAACAGAACATCCTTAATGAATGTTTTACAAGCAAATCCAGAAGATGCACAAATTTTGATGGAGAACCTTTTCATGAGATTAAAGGGGCATAAAGCATTAGGCTTTCAATATCCAGATACAGATCCTGGATTGGTTCTTCATGAAGAGCTTGATGGAAGCAACACAAGAAGAAGCTCTTCTCATGCCTGTACAAATCATTTTCATGAACATTCGCCAATGCAGGAAGAGAAATACAGAAATCTCGGATACTCGGAGGCCAGCATGCTTAACGTGACTAATGAGGATGGTTTAATCACTAAACATAACATGATTCCTCAGGATGGGAAAAGAGATCTCCATGCAGCTTCACACAAAGGGAAACTTGACATGGTTGAAATTCTGCTTGAAAGAGAAGCAAATGCCAAGATCCCAAATGGGTGCACACAAAGGGCTACTATGGTAGAAAAGCTAAAAAACAAGAGCATTTTTGGACAAATATTGAGTTGTGAAAATGAGAAGAAATCAGATGAACATATAATAGACTTTGTAAAGCCAGAAATCCTTAACCTTAACAACAGTGACTCAACAAGAAATAGAAAACAATATGGTATTAGATCTATCAACTTTCCATTAGAGAAAAAATATACAAACTCCTCATATTCTACAAATTTAAACTGTCCAAGTGACAGGGAAATAGCAAGGTTCATCAAGAAGAGAGTAACAATTCACTTGCAATGTGGATGCAGAGGTACTTCACAGGGACAGCATGGAAAACTGGTTATCCTACCTGATTCATTAGAAGAGTTGCTCAAGTTTGGTGGTGGAAAATTTGGAGGCTTCAGCCCCACAAAAGTAATTAATACAGAGAATGCTGAGATAGATGATATAAATGTCATTAGAGATGGTGATCATCTCTTCCTGCTTTGCAGCAATTGTGAAAATTTGACTTCATGA 2211 0.3817 MSLSCAKNFFKRFCIDEFQIGSYAHSSFLSNDLLLSLGARINQEATLGRYIISPFNPRYRAWEMLLVALVIYSAWICPFEFAFLPYKPNALFIIDNIVNGFFAIDIMLTFFVAYLDSHSYLFVDDPKRISIRLEKDISFGYFWTRCTKLIAVTLFAVHCAGCFNYLIADRYPDPKRTWIGALYPNFKEVSLWDRYVTAMYWSIVTLTTTGYGDLHAENTREMLFGISYMLFNLGLTSYIIGNMTNLVVHWTNHTRNFRGLVLVPQRDTIRTASEFASRNQLPCQIQNQMLSHICLRFKTEGLKQQETLNDLPKTIRSSITHHLFFPVVQKVYLFQGVSHDFLFQLVSEMEAEYFPPKEDVILQNDSATDLYVLVSGAVDIVQYIDGHDQVLGKVHAVDVFGEIGVLYHIPQPFTFQTNELSQILRLNRTSLMNVLQANPEDAQILMENLFMRLKGHKALGFQYPDTDPGLVLHEELDGSNTRRSSSHACTNHFHEHSPMQEEKYRNLGYSEASMLNVTNEDGLITKHNMIPQDGKRDLHAASHKGKLDMVEILLEREANAKIPNGCTQRATMVEKLKNKSIFGQILSCENEKKSDEHIIDFVKPEILNLNNSDSTRNRKQYGIRSINFPLEKKYTNSSYSTNLNCPSDREIARFIKKRVTIHLQCGCRGTSQGQHGKLVILPDSLEELLKFGGGKFGGFSPTKVINTENAEIDDINVIRDGDHLFLLCSNCENLTS 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0353 736 ProSiteProfiles KHA domain profile. 658 736 IPR021789 -
Lal3g0353 736 CDD CAP_ED 333 446 IPR000595 -
Lal3g0353 736 Pfam KHA, dimerisation domain of potassium ion channel 657 726 IPR021789 -
Lal3g0353 736 SUPERFAMILY Voltage-gated potassium channels 54 247 - -
Lal3g0353 736 ProSiteProfiles Ankyrin repeat region circular profile. 533 564 - -
Lal3g0353 736 Pfam Cyclic nucleotide-binding domain 353 437 IPR000595 -
Lal3g0353 736 Gene3D - 125 248 - -
Lal3g0353 736 Gene3D Jelly Rolls 297 457 IPR014710 -
Lal3g0353 736 SUPERFAMILY cAMP-binding domain-like 266 453 IPR018490 -
Lal3g0353 736 SMART cnmp_10 333 450 IPR000595 -
Lal3g0353 736 ProSiteProfiles cAMP/cGMP binding motif profile. 333 452 IPR000595 -
Lal3g0353 736 Pfam Ion transport protein 131 254 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lal3g0353 736 Pfam Ion transport protein 60 121 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lal3g0353 736 ProSiteProfiles Ankyrin repeat profile. 533 565 IPR002110 GO:0005515
Lal3g0353 736 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 132 736 - -
Lal3g0353 736 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 1 132 - -
Lal3g0353 736 PANTHER POTASSIUM CHANNEL AKT1 1 132 IPR045319 GO:0005249|GO:0006813
Lal3g0353 736 PANTHER POTASSIUM CHANNEL AKT1 132 736 IPR045319 GO:0005249|GO:0006813
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0353 Lal-Chr3 2333771 2337495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0353 1 726 Ion Channels AT5G46240 51.414 0.0 746
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0353 K21867 - gmx:100783528 1049.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0353 3 2333771 2337495 Lal3g0353 3 2333771 2337495 ECH
Lal5g1378 5 16461348 16464796 Lal3g0353 3 2333771 2337495 LSH