Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0349 ATGTCTAGAAGAAAGGTTAGGGAGCCAAAGGAGGAAACGGTGACTCTTGGTCCAGCTGTCAGAGATGGTGAACATGTTTTTGGTGTGGCTCGCATCTTTGCGTCGTTTAATGACACCTTCATTCATGTGACTGATTTGTCTGGGAGGGAAACTCTTGTCCGTATCACTGGTGGAATGAAAGTTAAGGCTGACAGAGATGAATCATCTCCATATGCTGCTATGCTTGCAGCACAAGATGTTGCTACCAGATGCAAGGAGCTGGGGATAACTGCTCTGCATATCAAACTCCGTGCCACTGGTGGTAATAAGACAAAAACACCTGGTCCTGGTGCTCAGTCCGCTCTTCGTGCCCTTGCTCGTTCAGGAATGAAAATTGGCCGTATAGAGGATGTGACTCCCATTCCTTCAGATAGCACTCGTAGGAAGAGTGGTAGAAGGGGTAGAAGGCTTTAA 453 0.4746 MSRRKVREPKEETVTLGPAVRDGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVATRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKSGRRGRRL 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0349 150 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 2 150 IPR001971 GO:0003735|GO:0005840|GO:0006412
Lal3g0349 150 Hamap 30S ribosomal protein S11 [rpsK]. 3 147 IPR001971 GO:0003735|GO:0005840|GO:0006412
Lal3g0349 150 ProSitePatterns Ribosomal protein S11 signature. 115 137 IPR018102 -
Lal3g0349 150 PANTHER BNAA05G27530D PROTEIN 2 150 - -
Lal3g0349 150 Pfam Ribosomal protein S11 28 146 IPR001971 GO:0003735|GO:0005840|GO:0006412
Lal3g0349 150 PIRSF RPS11p_RPS11a_RPS14e_RPS11o 1 147 IPR001971 GO:0003735|GO:0005840|GO:0006412
Lal3g0349 150 SUPERFAMILY Translational machinery components 23 148 - -
Lal3g0349 150 MobiDBLite consensus disorder prediction 130 150 - -
Lal3g0349 150 Gene3D Ribosomal protein S11 1 150 IPR036967 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0349 Lal-Chr3 2288503 2291427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0349 1 139 Cytoplasmic Ribosomal Protein Gene Family AT3G11510 90.647 5.45e-92 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0349 K02955 K01000 gmx:100780604 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1385 5 16525304 16527604 Lal3g0349 3 2288503 2291427 LSH
Lal3g0349 3 2288503 2291427 Lal11g0495 11 3878231 3880452 LSH