Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0346 ATGGAGCGCTTTGCCCGGTCCACTGAAGGTTCTCGCTCTGATCCGTCGCCGGAATGGACCGGACCCGCCGCCGAAACCGGCCTCGAAGGGTCTATGTGGCAATTGGGATTAGGTGCTGATGGTGGTGGTGGTGGCGGCGGTGAGGAATCGTACCCGCTACGTCCTGGTGAGGCTGATTGTATGTACTATTTAAGGACTGGAGTCTGTGGCTATGGCTCGCGTTGCCGATTCAACCATCCTCCTGATTGTGCCGCGGTTATCCAAGCTGCAAGGACCGGAGAGTTTCCAGAACGAGTAGGCCAGCCTGTGTGCCAGTATTATATGAGGACAGGGTCATGCAAATTTGGTCCATCCTGCAAGTACCACCATCCTAAGGAGGGAGGAGGCACTGCTAACCCTGTCTCACTAAATTATTATGGATATCCATTGCGACCGGGTGAGAAAGAGTGTTCCTACTATGTGAAGACGGGGCAATGCAAGTTTGGTTCAACTTGCAAGTTCCACCATCCACAGCCTGCTGGTATCCAAATTCCACCACTGCCACCGCCAGTTCCCCAAGTTTCACATTTATCTGTGCCTGTGCCTTCACCATTATATCCAACTGCACAGCCTCCATCTGGTCTTTCACCACAACAATTTGGTGTACTGGTTGCAAGGCCACCTCTGCTACCTGGATCATATGTCCAGAGCCCCTATGGCCCTGTTGTACTGTCCCCTGCCATGGTCCCTTATTCAGGCTGGGCTCCTTATCAGGCTACTGCAACAAGCCCTGTACTTCCTTCAAGTACTCCATCTAATGTTGGTTCAGCACAGCTCTATGGGATAACCCAGCTACCTTCATTAGCAGGTGCCTATACTGGACCTTATCAACCTTCTGTTTCCTTAATTGGTCCTTCAAGCAGTAGTCAGAAGGAGCAGTCACTTCCAGAAAGACCTGATCAACCAGAATGTCAGTATTACATGAGAACAGGGGAGTGCAAATTTGGTTCATCTTGCAGGTACCACCATCCACCAGACATGAGTGCACCAAAAGCTACTGTGACCCTTAGTCCTGCGGGTCTACCTTTGCGCCCGGAAGATAATCCGTTACCGAAAAGAGAGCATCGTAACACCCCAGGGCAGAGCTCCCTACAAGGGACCGATACTGAAGTCTGTGGAAAAATCAAATTAGGGATAATTCAGCCACTGTCTCTTTACCTTTTCCCCAGTGACCAACTTAAGCGCCCTCCTCCTATCGTCACCATCTTACCACCACCATCAACTCTGATGATCACTGCTCCTCGAGCTCTATCTGAAGGTGTCGTCACTGGTCATCAGTCTGCCGTTGATGCAGATTTTGCCTCTTCATCTTTAGCACCAGTGTTGGTTCAGAAAATTGCTGTTGTGCGTCAGTTTAAAATTTCATCAAAGGGGGCACCACCTTGCACACATTATGCGCAACGTGGAGTATGTAAGTTTGGTCCTGCATGCAGATTTGATCATCCTGTAGCATCATTGAGTTATAGCCCATCTGCTTCTTCCTTGGCTGACATGCCGGTTGCTCCATATCCCGTGGGTTCATCAATTGGTACACTTGCTCCATCATCTTCATCATCAGAGTTGCGGCCTGACCTTACACCAGGTTCCAACAAAGAGGCTATTTCATCCAGGCTGACTTTGCCAGTGAGCACAACGACTGGATCAGTCGGCTTGACTTTGTCAACCGGTGGACCTGTTTCTCAATCAAGCAGTCAACCATATTCTCAGATTTCCAATCCTTTAGCTGCTCCTAGTACTACTACAAGTGGTAATGCCTTTCACATCTCAAGCTAA 1812 0.4961 MERFARSTEGSRSDPSPEWTGPAAETGLEGSMWQLGLGADGGGGGGGEESYPLRPGEADCMYYLRTGVCGYGSRCRFNHPPDCAAVIQAARTGEFPERVGQPVCQYYMRTGSCKFGPSCKYHHPKEGGGTANPVSLNYYGYPLRPGEKECSYYVKTGQCKFGSTCKFHHPQPAGIQIPPLPPPVPQVSHLSVPVPSPLYPTAQPPSGLSPQQFGVLVARPPLLPGSYVQSPYGPVVLSPAMVPYSGWAPYQATATSPVLPSSTPSNVGSAQLYGITQLPSLAGAYTGPYQPSVSLIGPSSSSQKEQSLPERPDQPECQYYMRTGECKFGSSCRYHHPPDMSAPKATVTLSPAGLPLRPEDNPLPKREHRNTPGQSSLQGTDTEVCGKIKLGIIQPLSLYLFPSDQLKRPPPIVTILPPPSTLMITAPRALSEGVVTGHQSAVDADFASSSLAPVLVQKIAVVRQFKISSKGAPPCTHYAQRGVCKFGPACRFDHPVASLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPDLTPGSNKEAISSRLTLPVSTTTGSVGLTLSTGGPVSQSSSQPYSQISNPLAAPSTTTSGNAFHISS 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0346 603 MobiDBLite consensus disorder prediction 343 380 - -
Lal3g0346 603 Gene3D - 129 177 - -
Lal3g0346 603 SUPERFAMILY CCCH zinc finger 101 126 IPR036855 GO:0046872
Lal3g0346 603 ProSiteProfiles Zinc finger C3H1-type profile. 469 497 IPR000571 GO:0046872
Lal3g0346 603 SUPERFAMILY CCCH zinc finger 315 339 IPR036855 GO:0046872
Lal3g0346 603 ProSiteProfiles Zinc finger C3H1-type profile. 311 339 IPR000571 GO:0046872
Lal3g0346 603 ProSiteProfiles Zinc finger C3H1-type profile. 144 172 IPR000571 GO:0046872
Lal3g0346 603 SUPERFAMILY CCCH zinc finger 473 499 IPR036855 GO:0046872
Lal3g0346 603 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 146 171 IPR000571 GO:0046872
Lal3g0346 603 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 125 IPR000571 GO:0046872
Lal3g0346 603 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 56 81 IPR000571 GO:0046872
Lal3g0346 603 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 472 495 IPR000571 GO:0046872
Lal3g0346 603 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 313 338 IPR000571 GO:0046872
Lal3g0346 603 MobiDBLite consensus disorder prediction 1 50 - -
Lal3g0346 603 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872
Lal3g0346 603 Gene3D - 55 128 - -
Lal3g0346 603 MobiDBLite consensus disorder prediction 293 315 - -
Lal3g0346 603 Gene3D - 462 518 - -
Lal3g0346 603 Gene3D - 300 372 - -
Lal3g0346 603 MobiDBLite consensus disorder prediction 525 603 - -
Lal3g0346 603 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 470 593 - -
Lal3g0346 603 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 359 - -
Lal3g0346 603 SMART c3hfinal6 311 338 IPR000571 GO:0046872
Lal3g0346 603 SMART c3hfinal6 469 496 IPR000571 GO:0046872
Lal3g0346 603 SMART c3hfinal6 144 171 IPR000571 GO:0046872
Lal3g0346 603 SMART c3hfinal6 98 125 IPR000571 GO:0046872
Lal3g0346 603 SMART c3hfinal6 54 81 IPR000571 GO:0046872
Lal3g0346 603 MobiDBLite consensus disorder prediction 293 308 - -
Lal3g0346 603 SUPERFAMILY CCCH zinc finger 146 172 IPR036855 GO:0046872
Lal3g0346 603 PANTHER PROTEIN PHOSPHATASE RELATED 470 593 - -
Lal3g0346 603 PANTHER PROTEIN PHOSPHATASE RELATED 1 359 - -
Lal3g0346 603 ProSiteProfiles Zinc finger C3H1-type profile. 54 82 IPR000571 GO:0046872
Lal3g0346 603 SUPERFAMILY CCCH zinc finger 58 82 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0346 Lal-Chr3 2269292 2279740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0346 471 560 C2H2 Transcription Factor Family AT5G18550 61.957 5.48e-16 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal3g0346 zf-CCCH 1.1e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0346 - - gmx:100789405 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1388 5 16542064 16551452 Lal3g0346 3 2269292 2279740 LSH
Lal3g0346 3 2269292 2279740 Lal11g0493 11 3851814 3862454 LSH
Lal14g1947 14 18650193 18654488 Lal3g0346 3 2269292 2279740 PCT
Lal7g1429 7 19224568 19228641 Lal3g0346 3 2269292 2279740 PCT
Lal19g1503 19 17401376 17406689 Lal3g0346 3 2269292 2279740 PCT
Lal3g0346 3 2269292 2279740 Lal14g1947 14 18650193 18654488 PCT
Lal3g0346 3 2269292 2279740 Lal7g1429 7 19224568 19228641 PCT
Lal3g0346 3 2269292 2279740 Lal19g1503 19 17401376 17406689 PCT