Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0344 ATGTCCAACTCTAGAACCTCAAATACTTCCACTAAAGGAAACACCAACCAAACCCAAATGAACTCATTTTTTCTTCAACTAAACACATCACCTCCTAGTGAAAAAAGAGGCAGAAGAAAGCAAGCAGAACCAGGAAAATTTCTTGGTGTAAGGAAACGCCCTTGGGGTAGATATGCTGCTGAAATTAGAGACCCTATAACTAAAGAAAGACATTGGCTTGGAACATTTGACACTGCTGAAGAAGCTGCTATTGCTTATGATACAGCTTCTATCTCCATGAAAGGTAGCCAAGCTAGAACAAACTTCATTTATTCTAACAATAATAACACCAATTTTCACAATTTCCTTACTCCTATGGAACTTCAATCTCTTTTACCAACTCCACAGTTCATCACAAACACTCAAAGTCAAAATGCTTTGCACTTAAACAATGCCATATGTGATGAAACTTCATATGGATCAACACCATTGGATGATAATTTTTTCTTCTCTAATGATTCTAATAACTCTGGCTATTTGGAATGCATAGTTCCTGATAGTTGCTTAAGACCTGTTTCCATGCAGAGCAATGTTAATGCTTCAAGTGACCAAAATGGTACCTACATAAACAGAAACACCATAGAGGGTCATTCACATTTTGATAACACTGCATTTTCTCATGGAACCTTAAGCATGCAAACAACAATGCAAGCTTCTAACTTTGGAGGTTTTTCTTACCAAAGTGAACCTAGTGAAGGATTCCTGGATGATAAGCAATCATGGAATTGCAATTCTAGTGAACTTTCAGCTATATTTAACAAACCATTAAGGACTGAAGATGGGTACTGCATTGGTGCATTGTGTTGTCCTATCACTGATAGTTCAAACTATGGGACTGTTTCTTCATGTTCTCCATCAGTACCTCCTCTCTTTGAGGATGTTGACTTGGGATACTCACCCTTCTAA 945 0.3757 MSNSRTSNTSTKGNTNQTQMNSFFLQLNTSPPSEKRGRRKQAEPGKFLGVRKRPWGRYAAEIRDPITKERHWLGTFDTAEEAAIAYDTASISMKGSQARTNFIYSNNNNTNFHNFLTPMELQSLLPTPQFITNTQSQNALHLNNAICDETSYGSTPLDDNFFFSNDSNNSGYLECIVPDSCLRPVSMQSNVNASSDQNGTYINRNTIEGHSHFDNTAFSHGTLSMQTTMQASNFGGFSYQSEPSEGFLDDKQSWNCNSSELSAIFNKPLRTEDGYCIGALCCPITDSSNYGTVSSCSPSVPPLFEDVDLGYSPF 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0344 314 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 314 - -
Lal3g0344 314 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Lal3g0344 314 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Lal3g0344 314 MobiDBLite consensus disorder prediction 1 21 - -
Lal3g0344 314 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 314 - -
Lal3g0344 314 SUPERFAMILY DNA-binding domain 46 104 IPR016177 GO:0003677
Lal3g0344 314 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Lal3g0344 314 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Lal3g0344 314 Pfam AP2 domain 47 95 IPR001471 GO:0003700|GO:0006355
Lal3g0344 314 CDD AP2 46 102 IPR001471 GO:0003700|GO:0006355
Lal3g0344 314 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0344 Lal-Chr3 2265848 2266792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0344 1 235 AP2-EREBP Transcription Factor Family AT5G18560 39.474 2.20e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal3g0344 AP2 3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0344 - - gmx:102664746 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1389 5 16552485 16553432 Lal3g0344 3 2265848 2266792 LSH
Lal14g1948 14 18655267 18656250 Lal3g0344 3 2265848 2266792 PCT
Lal7g1430 7 19230066 19231106 Lal3g0344 3 2265848 2266792 PCT
Lal3g0344 3 2265848 2266792 Lal14g1948 14 18655267 18656250 PCT
Lal3g0344 3 2265848 2266792 Lal7g1430 7 19230066 19231106 PCT