Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0339 ATGGGTGGTTGTTTTCCTTGTTTTGGATCATCCAACAATGAGGATAACAATAATGGGGTGAAAGAAGTAGTTGCCAAGAAAGAATCTTTCAAAGATGCTTCAATTCCTCAATCTCACTACCCCAGTAGTGTTAGTTCAGATAAATCAAAATCACGAAGTGTCTCAGATCCTAAGAAGGAAATACCAGTTCCAAAGGATGGACCAACAGCACATATTGCTGCACAGACATTTACATTCCGTGAGCTTGCAGTTGCTACGAAGAATTTTAGGCCAGAGTGTTTATTAGGCGAAGGAGGTTTTGGACGTGTTTACAAAGGTCGCCTTGAGAACACAGGACAAACCCTGATGGGCCCGCTGCTAAATTCTAATAGTTCTTACAATGATTTTGATTTACCGTATACTGAAGCTCGCCTTATGCCTTTCACTTCAAGTGAAAGCCCATTTTCGGATTGGAAAATTGTTATCGATTTTCATTTGATTATTGATCTATTAGTTCCGGAAACAGTCTCTTCGCTCGTGAGGGTAGTTGCTGTAAAACAGCTTGACCGAAATGGCCTTCAAGGAAATCGAGAATTTTTGGTGGAGGTTCTCATGCTCAGCCTCTTGCATCACCCAAACCTTGTGAACTTAATCGGTTATTGTGCTGATGGTGACCAGCGGCTTCTTGTTTATGAATTTATGCCATTGGGGTCTTTGGAGGATCATTTACATGATCTTCCACCTGACAAGGAGCCCCTGGACTGGAACACTAGGATGAAAATAGCAGCAGGTGCAGCAAAGGGATTGGAATATTTGCATGACAAGGCAAACCCCCCTGTGATATATAGAGACTTAAAGTCATCCAACATCCTCCTAGACGAGGGTTATCATCCTAAGTTATCAGATTTTGGGCTGGCAAAGCTTGGTCCAGTTGGTGACAAGACTCATGTATCCACACGAGTAATGGGAACATATGGCTATTGTGCCCCAGAGTATGCTATGACTGGTCAATTAACTCTGAAGTCTGATGTCTACAGTTTTGGAGTTGTCTTCCTTGAACTTATTACAGGGCGCAAAGCTATTGATAATACACGTTCACATGGAGAGCATAATCTTGTTGCATGGGCACGACCTCTCTTTAAAGATCGTCGGAAGTTCCCAAAAATGGCAGACCCTCTACTACAAGGCCATTATCCAATGCGAGGACTGTACCAAGCACTTGCAGTTGCAGCAATGTGTTTGCAGGAACAAGCTGCTACAAGGCCTCTTATCGGTGATGTAGTAACTGCTCTCACATATCTGGCCTCCCAGACATATGATCCAAATGCACCCAATCTGTCTAATAGGCTTGGTGGTCCGTCAACCCCTAGGAGCAAGGATGATAGAAGGAACATGGGAGACGGTGTGGATAGCCCAGACCGTGGACGGATTGGCTCCCCTTCTGCCCACAGAAACTCGCCTGATTACAGGAAGAGAGACAGTAGGGATCCGAGTTCTGGGACAGAGTTTGGCAGGAGTGTCTCTAATGGTGGATCAGGGAGAAAATGGGGATTGGACGATGTAGAAAGGCAGGAGTCTCAGAAAGATAGCCCTGTAAATACTGGAAGAGCTAGAGAGACTCCAAGGAACCGTGACCTGGACAGAGAACGCGCGGTGGCAGAAGCAAGAGTATGGGGTGAGAATTGGAGAGAAAAGAAGAGAGCAAATGCCATGGGCAGCTTTGATGCTACCAATTAG 1716 0.451 MGGCFPCFGSSNNEDNNNGVKEVVAKKESFKDASIPQSHYPSSVSSDKSKSRSVSDPKKEIPVPKDGPTAHIAAQTFTFRELAVATKNFRPECLLGEGGFGRVYKGRLENTGQTLMGPLLNSNSSYNDFDLPYTEARLMPFTSSESPFSDWKIVIDFHLIIDLLVPETVSSLVRVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRSHGEHNLVAWARPLFKDRRKFPKMADPLLQGHYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAPNLSNRLGGPSTPRSKDDRRNMGDGVDSPDRGRIGSPSAHRNSPDYRKRDSRDPSSGTEFGRSVSNGGSGRKWGLDDVERQESQKDSPVNTGRARETPRNRDLDRERAVAEARVWGENWREKKRANAMGSFDATN 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0339 571 Gene3D Phosphorylase Kinase; domain 1 167 227 - -
Lal3g0339 571 PANTHER OS07G0668900 PROTEIN 171 566 - -
Lal3g0339 571 PANTHER OS07G0668900 PROTEIN 1 116 - -
Lal3g0339 571 MobiDBLite consensus disorder prediction 448 463 - -
Lal3g0339 571 MobiDBLite consensus disorder prediction 1 20 - -
Lal3g0339 571 MobiDBLite consensus disorder prediction 478 492 - -
Lal3g0339 571 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL27 171 566 - -
Lal3g0339 571 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL27 1 116 - -
Lal3g0339 571 MobiDBLite consensus disorder prediction 35 50 - -
Lal3g0339 571 SUPERFAMILY Protein kinase-like (PK-like) 75 438 IPR011009 -
Lal3g0339 571 Gene3D Transferase(Phosphotransferase) domain 1 228 439 - -
Lal3g0339 571 SMART serkin_6 89 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0339 571 Gene3D Phosphorylase Kinase; domain 1 68 130 - -
Lal3g0339 571 CDD STKc_IRAK 174 425 - -
Lal3g0339 571 ProSiteProfiles Protein kinase domain profile. 89 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0339 571 MobiDBLite consensus disorder prediction 431 447 - -
Lal3g0339 571 Pfam Protein tyrosine and serine/threonine kinase 175 357 IPR001245 GO:0004672|GO:0006468
Lal3g0339 571 MobiDBLite consensus disorder prediction 28 67 - -
Lal3g0339 571 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Lal3g0339 571 MobiDBLite consensus disorder prediction 51 65 - -
Lal3g0339 571 MobiDBLite consensus disorder prediction 431 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0339 Lal-Chr3 2247845 2252709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0339 175 469 Glycoside Hydrolase AT3G07070 67.797 1.93e-139 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lal3g0339 PK_Tyr_Ser-Thr 1.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0339 - - gmx:100814575 756.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0339 3 2247845 2252709 Lal11g0492 11 3835428 3841457 LSH