Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0334 ATGGGATGTGTGTTTGGGAAACAGTCATCGGCGGCGAACAACACTGCAGGAGAGGAGGCCGCGGTGGAGAGGGAGTGGGAGAGGAGGAGGGATGAGCTGAAAGAAGCAAAAGCTGAAGTGATTGAGGGTGAGGGTGAGAGTGAAGCCCAGAATGGTGGTAGGAATCAGAAGGAGGGTATTGGTGGAGAGGAGAAGAGGACAAGGCCTTCAAGGAGGCGATCTTCGAAGTTTAATCCGCGGCTGAGCAATCCAACTGGTCATGTTCATGGTGAGCAGGTGGCAGCAGGGTGGCCCTCTTGGCTCTCCAAGGTTGCTGGGGAAGCTATCAATGGACTGATCCCTAGGAGAGCTGATACTTTTGAAAAAATTGATAAGATTGGGCAAGGTACATACAGCAATGTTTATAAAGCAAGGGATACTTTAACAGGGAAAATTGTTGCCCTAAAGAAGGTCCGTTTTGACAATTTAGAGCCCGAGAGTGTGAAATTCATGGCCAGGGAGATTCTGATTCTGCGTCGTCTAGATCATCCAAATGTTGTCAAACTGGAAGGCTTGGTGACATCTAGAATGTCATGCAGTTTGTATCTTGTATTTGAATACATGGTGCATGATTTGGCTGGACTTGCTACTAACCCAGCTATTAAGTTCACAGAGTCTCAGGTTAAATGTTACATGCATCAGCTATTTTCTGGATTGGAACATTGTCACAACCGCCATGTGCTGCATCGTGATATAAAAGGATCAAACCTCCTTATTGACAATGAAGGAATTCTTAAGATTGCTGATTTTGGATTAGCTTCCTTCTTTGATCCTAATCACAGGCACCCTATGACCAGTAGAGTGGTGACTTTATGGTATCGACCTCCTGAACTTCTTCTTGGAGCCACTGAATATGGTGTAGGAGTGGATCTCTGGAGTGCTGGCTGCATTCTTGCAGAATTATTGGCTGGAAAGCCTATTATGCCTGGTCGAACAGAGGTGGAGCAGCTACATAAGATATTTAAACTATGTGGTTCTCCTTCTGAAGAATATTGGAAAAAGTCAAAGTTGCCGCATGCTACAATTTTTAAGCCTCAGCAGTCCTACAAGCGGTGCATAGCAGAAACATTTAAAGATTTTCCACCATCATCCCTGCCACTAATTGAGACCCTTCTTGCAATTGATCCAGCTGAACGCCAGACTGCCACTGCTGCATTACAGAGTGAATTCTTTAAAACAAAACCTTATGCTTGTGAACCCTCTAGCCTTCCAAAATATCCTCCCAGCAAGGAGATGGATGCAAAGCTACGGGATGAAGAAGCTAGAAGATTGAGAGCAGCTGGTAAAGCTAATGCTGATGCTGTCAAGAAATCTCGTCCACGTGACCGAGTTGGGAGAGGAATTCCTGTTCCTGAGGCCAATGCTGAACTGCAAGTGAATATTGATAGACGGCGAATGATAACACATGCTAATGCTAAGAGCAAGAGTGAGAAGTTTCCTCCTCCCCACCAAGATGGAGCTCTAGGCTATTCTTTGGGTTCTTCACATCACATGGATCCAGGTTTTGATGCTCCTGATGTCCCATTTAGTTCCACAAACTTGTCACAACCTAAAGCGAATATCCAAACCTGGTCTGGCCCATTGGTAGAACCTGCTCCTGTGGGTGCACCAAGGAGAAAGAAGAAACTTGGAAGGTGA 1677 0.4562 MGCVFGKQSSAANNTAGEEAAVEREWERRRDELKEAKAEVIEGEGESEAQNGGRNQKEGIGGEEKRTRPSRRRSSKFNPRLSNPTGHVHGEQVAAGWPSWLSKVAGEAINGLIPRRADTFEKIDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMVHDLAGLATNPAIKFTESQVKCYMHQLFSGLEHCHNRHVLHRDIKGSNLLIDNEGILKIADFGLASFFDPNHRHPMTSRVVTLWYRPPELLLGATEYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQSYKRCIAETFKDFPPSSLPLIETLLAIDPAERQTATAALQSEFFKTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGKANADAVKKSRPRDRVGRGIPVPEANAELQVNIDRRRMITHANAKSKSEKFPPPHQDGALGYSLGSSHHMDPGFDAPDVPFSSTNLSQPKANIQTWSGPLVEPAPVGAPRRKKKLGR 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0334 558 MobiDBLite consensus disorder prediction 484 558 - -
Lal3g0334 558 CDD STKc_CDK9_like 120 404 - -
Lal3g0334 558 PANTHER CELL DIVISION PROTEIN KINASE 61 557 - -
Lal3g0334 558 SUPERFAMILY Protein kinase-like (PK-like) 115 409 IPR011009 -
Lal3g0334 558 PANTHER CYCLIN-DEPENDENT KINASE 61 557 - -
Lal3g0334 558 SMART serkin_6 120 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0334 558 MobiDBLite consensus disorder prediction 20 44 - -
Lal3g0334 558 MobiDBLite consensus disorder prediction 439 461 - -
Lal3g0334 558 ProSiteProfiles Protein kinase domain profile. 120 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0334 558 MobiDBLite consensus disorder prediction 521 536 - -
Lal3g0334 558 Gene3D Phosphorylase Kinase; domain 1 109 202 - -
Lal3g0334 558 Gene3D Transferase(Phosphotransferase) domain 1 203 443 - -
Lal3g0334 558 Pfam Protein kinase domain 120 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0334 558 MobiDBLite consensus disorder prediction 439 459 - -
Lal3g0334 558 MobiDBLite consensus disorder prediction 1 89 - -
Lal3g0334 558 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Lal3g0334 558 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0334 Lal-Chr3 2183422 2190417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0334 115 442 Core Cell Cycle Gene Families AT5G10270 51.744 1.50e-116 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lal3g0334 Pkinase 2.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0334 K08819 - gmx:100779413 958.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0334 3 2183422 2190417 Lal11g0487 11 3795522 3801222 LSH