Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0333 ATGCCCATCAAGATAAGAACCATAATCGACTTCAAATCTCGTTCCCAGCGTGTGGTTCAAGACGATTCTTCAATGGATGCGGTGGTGATTAGCGACGGTTTGACTCAGAGTTGCTGGGCCCACATGCCGCAGGAACTACTGAGAGAAGTGATTTTCAGAATCGAAGCTTCGGAGGACACGTGGCCTCAGAGGAAGAGTGTTGTTGCGTGTGCTGGAGTATGCCGTAGCTGGAGACATATCACTAAGGAAATTGTTAAGATACCTCAGTTTTCTTCCAAGATCACTTTCCCCATCTCAGTTAAGCAGCCTGGCCCCAGGGAGCATCTCTTGCAGTGCTTTATAAAGCGCAACCGGTCCACCCAAACATATCACTTGTATCTCAGTTTAACTAGTACACTAGTTGATGATGGGAAGTTCCTTCTGTCTGCACACAAGTGCAGACACCCCACCGGCACGGATTATATGATCTCTCTAGATGCAAATGATGTGTCAAAGGGAAGCAACAACTATGTTGGGAAACTGAGATCAAATTTTGTTGGAACCAAGTTTACAATCTATGATGCCCAGCTGGCTCATGCAGGAGCAAAGGTTACGAAAAGTCGCTCCACTAGGTCGGCGAATCTAAAACAAGTTTCACCCAAGGTTCCTACATGTAACTATCCAGTGGCACACATCTCTTATGAGTTGAATGTGCTTGGCTCCAGGGGACCTAGGAGAATGCACTGTGTCATGGATTCCATTCCTGCATCTGCAATTGAACCAGGAGGGGTAGCTCCTACACAGACTGAGTTTTCTCTTAAAAATATAGATATGTTTCCTTCATCCACTTTTTCTCGATCAAAATCAAATTGCGAGGAAAACTCCGTATCTGAACTTCTGGGTGATCAAAATGATGGGGTGTTAGTGTTGAAAAACAAGGCTCCAAGGTGGCACGAGCCGCTGCAGTGTTGGTGCTTAAACTTTCATGGACGGGTGACAATTGCATCAGTTAAAAACTTTCAGCTGTCGGCTTCCCCGGAAAACGGACCTGCTGGACCAGAGCATGATAAGATCATTCTCCAATTTGGAAAAGTCGGGAAGGATGTGTTTACGATGGATTACCGGTACCCTCTATCAGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGATACCAAGATTGCTTGTGAATAG 1176 0.4575 MPIKIRTIIDFKSRSQRVVQDDSSMDAVVISDGLTQSCWAHMPQELLREVIFRIEASEDTWPQRKSVVACAGVCRSWRHITKEIVKIPQFSSKITFPISVKQPGPREHLLQCFIKRNRSTQTYHLYLSLTSTLVDDGKFLLSAHKCRHPTGTDYMISLDANDVSKGSNNYVGKLRSNFVGTKFTIYDAQLAHAGAKVTKSRSTRSANLKQVSPKVPTCNYPVAHISYELNVLGSRGPRRMHCVMDSIPASAIEPGGVAPTQTEFSLKNIDMFPSSTFSRSKSNCEENSVSELLGDQNDGVLVLKNKAPRWHEPLQCWCLNFHGRVTIASVKNFQLSASPENGPAGPEHDKIILQFGKVGKDVFTMDYRYPLSAFQAFAICLSSFDTKIACE 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0333 391 PRINTS Tubby superfamily signature 154 170 IPR000007 -
Lal3g0333 391 PRINTS Tubby superfamily signature 170 194 IPR000007 -
Lal3g0333 391 PRINTS Tubby superfamily signature 219 246 IPR000007 -
Lal3g0333 391 PRINTS Tubby superfamily signature 303 320 IPR000007 -
Lal3g0333 391 PRINTS Tubby superfamily signature 321 337 IPR000007 -
Lal3g0333 391 PRINTS Tubby superfamily signature 348 367 IPR000007 -
Lal3g0333 391 PRINTS Tubby superfamily signature 369 391 IPR000007 -
Lal3g0333 391 ProSitePatterns Tub family signature 1. 321 334 IPR018066 -
Lal3g0333 391 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 5 391 - -
Lal3g0333 391 Pfam Tub family 100 386 IPR000007 -
Lal3g0333 391 Gene3D Tubby Protein; Chain A 97 391 IPR025659 -
Lal3g0333 391 SUPERFAMILY F-box domain 33 83 IPR036047 GO:0005515
Lal3g0333 391 ProSitePatterns Tub family signature 2. 376 391 IPR018066 -
Lal3g0333 391 PANTHER TUBBY-RELATED 5 391 - -
Lal3g0333 391 Pfam F-box domain 39 85 IPR001810 GO:0005515
Lal3g0333 391 SUPERFAMILY Tubby C-terminal domain-like 88 391 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0333 Lal-Chr3 2179109 2182635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0333 12 391 TUB Transcription Factor Family AT2G47900 69.713 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lal3g0333 Tub 2e-110 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0333 K19600 - gmx:100778346 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1401 5 16651661 16661606 Lal3g0333 3 2179109 2182635 LSH
Lal3g0333 3 2179109 2182635 Lal11g0485 11 3781767 3785913 LSH